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Improved outcomes in PI3K-pathway-altered metastatic HPV oropharyngeal cancer
Glenn J. Hanna, Alec Kacew, Nicole G. Chau, Priyanka Shivdasani, Jochen H. Lorch, Ravindra Uppaluri, Robert I. Haddad, Laura E. MacConaill
Glenn J. Hanna, Alec Kacew, Nicole G. Chau, Priyanka Shivdasani, Jochen H. Lorch, Ravindra Uppaluri, Robert I. Haddad, Laura E. MacConaill
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Research Article Genetics Oncology

Improved outcomes in PI3K-pathway-altered metastatic HPV oropharyngeal cancer

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Abstract

While it has been recognized that human papillomavirus–associated (HPV-associated) oropharyngeal cancer (OPC) portends an improved prognosis, distinct patterns of disease recurrence have emerged. Molecular characterization of this subset of HPV patients remains unexplored. We evaluated 52 metastatic HPV+ OPC patients from our institution and paired massively parallel sequencing data with clinical parameters and survival outcomes in 81% of patients. Genomic data were then compared with 2 molecularly defined, curable HPV+ cohorts. Metastatic HPV+ OPC patients with pulmonary-only metastases demonstrated worse outcomes. Nonexclusive somatic alterations in KMT2D and PIK3CA were most frequent, with PRKDC alterations occurring at higher frequency when compared with all sequenced HPV+ OPC patients. PI3K pathway alterations were associated with improved outcomes among metastatic HPV+ OPC patients. We demonstrate subtle differences in the mutational landscape between curable and metastatic HPV+ OPC populations, with a trend towards more frequent DNA repair protein alterations in the latter. We demonstrate improved outcomes when PI3K pathway alterations are present in these patients. We provide molecular insights for this important HPV+ subgroup that have significant therapeutic implications.

Authors

Glenn J. Hanna, Alec Kacew, Nicole G. Chau, Priyanka Shivdasani, Jochen H. Lorch, Ravindra Uppaluri, Robert I. Haddad, Laura E. MacConaill

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Figure 4

Key signaling pathway deregulation and survival outcomes in metastatic HPV-associated oropharyngeal cancer.

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Key signaling pathway deregulation and survival outcomes in metastatic H...
(A) Mutational signaling of the PI3K/MTOR/AKT pathway and its dysregulation in HPV+ oropharyngeal carcinoma. Each box represents the mutational frequency of gene(s) associated with a particular pathway protein. Somatic alteration frequencies among a metastatic HPV+ oropharyngeal cancer cohort (left, n = 42) and the TCGA and University of Chicago HPV+ oropharyngeal cancer cohorts (right, n = 87) are shown. Blue shading represents a dominance of inactivating mutations and red shading, activating mutations. (B) Key mutational frequencies among subgroups arranged by overall survival (OS) and time to recurrence (TTR), in months. Mutational frequencies (%) are not mutually exclusive and therefore columns total greater than 100% in some cases. (C) OS among metastatic HPV+ oropharyngeal cancer patients separated by PI3K pathway alteration status. *P < 0.05, log-rank testing.

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