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CCR10+ epithelial cells from idiopathic pulmonary fibrosis lungs drive remodeling
David M. Habiel, Milena S. Espindola, Isabelle C. Jones, Ana Lucia Coelho, Barry Stripp, Cory M. Hogaboam
David M. Habiel, Milena S. Espindola, Isabelle C. Jones, Ana Lucia Coelho, Barry Stripp, Cory M. Hogaboam
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Research Article Cell biology Pulmonology

CCR10+ epithelial cells from idiopathic pulmonary fibrosis lungs drive remodeling

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Abstract

Idiopathic pulmonary fibrosis (IPF) is a devastating fibrotic lung disease of unknown etiology and limited therapeutic options. In this report, we characterize what we believe is a novel CCR10+ epithelial cell population in IPF lungs. There was a significant increase in the percentage of CCR10+ epithelial cells in IPF relative to normal lung explants and their numbers significantly correlated to lung remodeling in humanized NSG mice. Cultured CCR10-enriched IPF epithelial cells promoted IPF lung fibroblast invasion and collagen 1 secretion. Single-cell RNA sequencing analysis showed distinct CCR10+ epithelial cell populations enriched for inflammatory and profibrotic transcripts. Consistently, cultured IPF but not normal epithelial cells induced lung remodeling in humanized NSG mice, where the number of CCR10+ IPF, but not normal, epithelial cells correlated with hydroxyproline concentration in the remodeled NSG lungs. A subset of IPF CCR10hi epithelial cells coexpress EphA3 and ephrin A signaling induces the expression of CCR10 by these cells. Finally, EphA3+CCR10hi epithelial cells induce more consistent lung remodeling in NSG mice relative to EphA3–CCR10lo epithelial cells. Our results suggest that targeting epithelial cells, highly expressing CCR10, may be beneficial in IPF.

Authors

David M. Habiel, Milena S. Espindola, Isabelle C. Jones, Ana Lucia Coelho, Barry Stripp, Cory M. Hogaboam

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Figure 5

Single-cell RNA-seq analysis of EpCAM+CCR10+ and EpCAM+CCR10– epithelial cells shows unique epithelial cell populations enriched by CCR10.

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Single-cell RNA-seq analysis of EpCAM+CCR10+ and EpCAM+CCR10– epithelial...
IPF epithelial cells were generated in CRC medium and then incubated in PEB medium overnight to promote CCR10 expression. Cells were then dissociated using Accutase and stained with fluorescently conjugated anti-EpCAM and -CCR10 antibodies. EpCAM+CCR10+ and EpCAM+CCR10– epithelial cells were FACS isolated and single-cell RNA-seq analysis was performed using the 10× Genomics platform. (A and B) Depicted are images showing CCR10+ versus CCR10– sequenced epithelial cells (A) and graph-based clustering of sequenced epithelial cells (B). Unique cell populations enriched in CCR10+ (blue) relative to CCR10– (black) epithelial cell populations are highlighted (brown and green circles). (C and D) Depicted are images showing SCGB1A1-expressing (C) or KRT5-expressing (D) epithelial cells. (E and F) Shown is K-mean cluster analysis of CCR10+ epithelial cells (E) and a heatmap of differentially expressed transcripts in cells from each K-mean cluster (F). CRC, conditionally reprogrammed cell medium; PEB, PneumaCult-Ex Plus Medium + 10 µM Y27632; FACS, fluorescence-activated cell sorting; IPF, idiopathic pulmonary fibrosis.

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ISSN 2379-3708

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