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Marked disparity of microRNA modulation by cGMP-selective PDE5 versus PDE9 inhibitors in heart disease
Kristen M. Kokkonen-Simon, Amir Saberi, Taishi Nakamura, Mark J. Ranek, Guangshuo Zhu, Djahida Bedja, Michaela Kuhn, Marc K. Halushka, Dong Ik Lee, David A. Kass
Kristen M. Kokkonen-Simon, Amir Saberi, Taishi Nakamura, Mark J. Ranek, Guangshuo Zhu, Djahida Bedja, Michaela Kuhn, Marc K. Halushka, Dong Ik Lee, David A. Kass
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Research Article Cardiology Cell biology

Marked disparity of microRNA modulation by cGMP-selective PDE5 versus PDE9 inhibitors in heart disease

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Abstract

MicroRNAs (miRs) posttranscriptionally regulate mRNA and its translation into protein, and are considered master controllers of genes modulating normal physiology and disease. There is growing interest in how miRs change with drug treatment, and leveraging this for precision guided therapy. Here we contrast 2 closely related therapies, inhibitors of phosphodiesterase type 5 or type 9 (PDE5-I, PDE9-I), given to mice subjected to sustained cardiac pressure overload (PO). Both inhibitors augment cyclic guanosine monophosphate (cGMP) to activate protein kinase G, with PDE5-I regulating nitric oxide (NO) and PDE9-I natriuretic peptide–dependent signaling. While both produced strong phenotypic improvement of PO pathobiology, they surprisingly showed binary differences in miR profiles; PDE5-I broadly reduces more than 120 miRs, including nearly half those increased by PO, whereas PDE9-I has minimal impact on any miR (P < 0.0001). The disparity evolves after pre-miR processing and is organ specific. Lastly, even enhancing NO-coupled cGMP by different methods leads to altered miR regulation. Thus, seemingly similar therapeutic interventions can be barcoded by profound differences in miR signatures, and reversing disease-associated miR changes is not required for therapy success.

Authors

Kristen M. Kokkonen-Simon, Amir Saberi, Taishi Nakamura, Mark J. Ranek, Guangshuo Zhu, Djahida Bedja, Michaela Kuhn, Marc K. Halushka, Dong Ik Lee, David A. Kass

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Figure 1

PDE5-I and PDE9-I applied to PO heart yield disparate miR profiles.

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PDE5-I and PDE9-I applied to PO heart yield disparate miR profiles.
Left...
Left ventricular myocardium from mice subjected to sham or PO surgery and subsequently given either vehicle, PDE5-I (Sil), or PDE9-I (PF-9613) were subjected to miR sequencing and subsequent differential expression analysis (n = 5 per group). (A) Volcano plot of miRs altered in PO versus sham, with miRs relevant to cardiac hypertrophy/fibrosis labeled. (B) Volcano plot of miRs altered in PO+Sil versus PO. (C) Volcano plot of miRs altered in PO+PF-9613 versus PO. For all volcano plots, dark gray dots indicate differentially expressed miRs; green triangles indicate miRs increased with PO, and decreased with drug treatment; red triangles indicate miRs decreased with PO, and increased with drug treatment; and pink diamonds indicate miRs labeled in panel A that are associated with cardiac hypertrophy and fibrosis (legend can be found in panel C). (D) Heatmap of all miRs changed significantly with PO for all treatment groups, clustered by both rows (miRs) and columns (samples). Row labels (i.e., miR names) can be found in Supplemental Table 4.

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