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Germline SAMD9 and SAMD9L mutations are associated with extensive genetic evolution and diverse hematologic outcomes
Jasmine C. Wong, … , Kevin Shannon, Jeffery M. Klco
Jasmine C. Wong, … , Kevin Shannon, Jeffery M. Klco
Published July 25, 2018
Citation Information: JCI Insight. 2018;3(14):e121086. https://doi.org/10.1172/jci.insight.121086.
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Research Article Hematology

Germline SAMD9 and SAMD9L mutations are associated with extensive genetic evolution and diverse hematologic outcomes

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Abstract

Germline SAMD9 and SAMD9L mutations cause a spectrum of multisystem disorders that carry a markedly increased risk of developing myeloid malignancies with somatic monosomy 7. Here, we describe 16 siblings, the majority of which were phenotypically normal, from 5 families diagnosed with myelodysplasia and leukemia syndrome with monosomy 7 (MLSM7; OMIM 252270) who primarily had onset of hematologic abnormalities during the first decade of life. Molecular analyses uncovered germline SAMD9L (n = 4) or SAMD9 (n = 1) mutations in these families. Affected individuals had a highly variable clinical course that ranged from mild and transient dyspoietic changes in the bone marrow to a rapid progression of myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML) with monosomy 7. Expression of these gain-of-function SAMD9 and SAMD9L mutations reduces cell cycle progression, and deep sequencing demonstrated selective pressure favoring the outgrowth of clones that have either lost the mutant allele or acquired revertant mutations. The myeloid malignancies of affected siblings acquired cooperating mutations in genes that are also altered in sporadic cases of AML characterized by monosomy 7. These data have implications for understanding how SAMD9 and SAMD9L mutations contribute to myeloid transformation and for recognizing, counseling, and treating affected families.

Authors

Jasmine C. Wong, Victoria Bryant, Tamara Lamprecht, Jing Ma, Michael Walsh, Jason Schwartz, Maria del pilar Alzamora, Charles G. Mullighan, Mignon L. Loh, Raul Ribeiro, James R. Downing, William L. Carroll, Jeffrey Davis, Stuart Gold, Paul C. Rogers, Sara Israels, Rochelle Yanofsky, Kevin Shannon, Jeffery M. Klco

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Figure 4

SAMD9L R1281K mutation in MLSM7 family 5.

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SAMD9L R1281K mutation in MLSM7 family 5.
(A) Pedigree showing the germ...
(A) Pedigree showing the germline SAMD9L p.R1281K mutation (in red) in the healthy carrier (5M) and all 8 children. Squares indicate male family members and circles female members. Arrow indicates the proband. Unaffected individuals are indicated with open symbols, mutation carriers are denoted with black dots, individuals with a clinical history of BM Mo7 are shown with filled symbols, hatched symbol indicates CN-LOH involving chromosome 7q, carriers with dysplastic BM changes are shown with symbols filled with gray in addition to a black dot. (B) Sequencing results of individual PCR products from the amplified genomic DNA of patient 5A at the age of 15. The green boxes indicate individual missense mutations and the white boxes depict the normal sequence. Each column is an individual clone. Note that the p.D1171N mutation occur in cis with the germline p.R1281K mutation, while the p.T1053I does not. (C) Clonal evolution of BM cells from patient 5A (proband) over 18 years. Purple arrows indicate the time points at which cytogenetics (Cyto), SNP array (SNP), or SAMD9L sequencing (Seq) was performed. (D) EdU cell cycle in 293T cells transfected with vectors encoding GFP (empty vector), wild-type SAMD9L, SAMD9L p.R1281K, SAMD9L p.R1281K+p.D1171N, or SAMD9L p.T1053I. Percentages of cells in the S phase of the cell division cycle were compared using 1-way ANOVAs with repeated measures followed by Tukey’s post hoc multiple-comparisons test; significance was based on α = 0.05 (n = 3). ****P < 0.0001. n.s., not significant. Individual data points, and mean ± SD are shown. Data representative of 2 experiments completed in triplicate.

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