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Peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas
Sören Müller, … , Ian F. Pollack, Gary Kohanbash
Sören Müller, … , Ian F. Pollack, Gary Kohanbash
Published April 5, 2018
Citation Information: JCI Insight. 2018;3(7):e98791. https://doi.org/10.1172/jci.insight.98791.
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Research Article Immunology Vaccines

Peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas

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Abstract

Low-grade gliomas (LGGs) are the most common brain tumor affecting children. We recently reported an early phase clinical trial of a peptide-based vaccine, which elicited consistent antigen-specific T cell responses in pediatric LGG patients. Additionally, we observed radiologic responses of stable disease (SD), partial response (PR), and near-complete/complete response (CR) following therapy. To identify biomarkers of clinical response in peripheral blood, we performed RNA sequencing on PBMC samples collected at multiple time points. Patients who showed CR demonstrated elevated levels of T cell activation markers, accompanied by a cytotoxic T cell response shortly after treatment initiation. At week 34, patients with CR demonstrated both IFN signaling and Poly-IC:LC adjuvant response patterns. Patients with PR demonstrated a unique, late monocyte response signature. Interestingly, HLA-V expression, before or during therapy, and an early monocytic hematopoietic response were strongly associated with SD. Finally, low IDO1 and PD-L1 expression before treatment and early elevated levels of T cell activation markers were associated with prolonged progression-free survival. Overall, our data support the presence of unique peripheral immune patterns in LGG patients associated with different radiographic responses to our peptide vaccine immunotherapy. Future clinical trials, including our ongoing phase II LGG vaccine immunotherapy, should monitor these response patterns.

Authors

Sören Müller, Sameer Agnihotri, Karsen E. Shoger, Max I. Myers, Nicholas Smith, Srilakshmi Chaparala, Clarence R. Villanueva, Ansuman Chattopadhyay, Adrian V. Lee, Lisa H. Butterfield, Aaron Diaz, Hideho Okada, Ian F. Pollack, Gary Kohanbash

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Figure 5

Expression of immune-specific pathways correlates with survivin ELISPOT counts.

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Expression of immune-specific pathways correlates with survivin ELISPOT ...
(A) Significance (y axis, Fisher’s exact test) of pathway enrichment for genes significantly correlating with ELISPOT counts. The ratio of significantly correlated genes to the total number of genes in the pathway is shown by the orange line. The average correlation Z-score of genes in each pathway is indicated by color. (B) Average activation Z-score (color) for pathways (columns) across 3 ELISPOTs (rows). Pathways with concordant activation score are highlighted. (C) Correlation of expression of indicated genes (columns) at different time points (rows) with PFS across all patients.

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