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A flexible, multilayered protein scaffold maintains the slit in between glomerular podocytes
Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber
Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber
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Research Article Nephrology

A flexible, multilayered protein scaffold maintains the slit in between glomerular podocytes

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Abstract

Vertebrate life critically depends on renal filtration and excretion of low molecular weight waste products. This process is controlled by a specialized cell-cell contact between podocyte foot processes: the slit diaphragm (SD). Using a comprehensive set of targeted KO mice of key SD molecules, we provided genetic, functional, and high-resolution ultrastructural data highlighting a concept of a flexible, dynamic, and multilayered architecture of the SD. Our data indicate that the mammalian SD is composed of NEPHRIN and NEPH1 molecules, while NEPH2 and NEPH3 do not participate in podocyte intercellular junction formation. Unexpectedly, homo- and heteromeric NEPHRIN/NEPH1 complexes are rarely observed. Instead, single NEPH1 molecules appear to form the lower part of the junction close to the glomerular basement membrane with a width of 23 nm, while single NEPHRIN molecules form an adjacent junction more apically with a width of 45 nm. In both cases, the molecules are quasiperiodically spaced 7 nm apart. These structural findings, in combination with the flexibility inherent to the repetitive Ig folds of NEPHRIN and NEPH1, indicate that the SD likely represents a highly dynamic cell-cell contact that forms an adjustable, nonclogging barrier within the renal filtration apparatus.

Authors

Florian Grahammer, Christoph Wigge, Christoph Schell, Oliver Kretz, Jaakko Patrakka, Simon Schneider, Martin Klose, Julia Kind, Sebastian J. Arnold, Anja Habermann, Ricarda Bräuniger, Markus M. Rinschen, Linus Völker, Andreas Bregenzer, Dennis Rubbenstroth, Melanie Boerries, Dontscho Kerjaschki, Jeffrey H. Miner, Gerd Walz, Thomas Benzing, Alessia Fornoni, Achilleas S. Frangakis, Tobias B. Huber

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Figure 4

Structural modeling of NPHS1 and NEPH1 based on their homology to TITIN.

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Structural modeling of NPHS1 and NEPH1 based on their homology to TITIN....
(A) Length distribution of individual strands within mouse foot processes in PET reconstructions gives 2 gaussian-like distributions centered at 45 nm and 23 nm. (B) For mouse NPHS1, databases (uniprot: Q9QZS7, ncbi: NP_062332.2) predict 8 N-terminal immunoglobulin type C2 domains and 1 C-terminal fibronectin type III domain. A ninth Ig domain (between Ig6 and Ig7, aa 650–753) was predicted with sequence alignments of all mouse NPHS1 Ig domains and with the use of PHYRE2 (36). Straight length for NEPHRIN was estimated at 43.8 nm. (C) In accordance with the literature, mouse NEPH1 (uniprot Q80W68, ncbi: NM_019459.2) consists of 5 N-terminal immunoglobulin type C2 domains. In the case of NEPH1, straight length was estimated to be 19.7 nm.

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