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Survey for human polyomaviruses in cancer
Tuna Toptan, Samuel A. Yousem, Jonhan Ho, Yuki Matsushima, Laura P. Stabile, Maria-Teresa Fernández-Figueras, Rohit Bhargava, Akihide Ryo, Patrick S. Moore, Yuan Chang
Tuna Toptan, Samuel A. Yousem, Jonhan Ho, Yuki Matsushima, Laura P. Stabile, Maria-Teresa Fernández-Figueras, Rohit Bhargava, Akihide Ryo, Patrick S. Moore, Yuan Chang
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Clinical Research and Public Health Virology

Survey for human polyomaviruses in cancer

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Abstract

Over the past 8 years, the discovery of 11 new human polyomaviruses (HPyVs) has revived interest in this DNA tumor virus family. Although HPyV infection is widespread and largely asymptomatic, one of these HPyVs, Merkel cell polyomavirus (MCV), is a bona fide human tumor virus. JC virus (JCV), BK virus, HPyV7, and trichodysplasia-spinulosa virus (TSV) can cause nonneoplastic diseases in the setting of immunosuppression. Few specific reagents are available to study the biology of the newly discovered HPyVs. We developed a pan-HPyV-screening method using a cocktail of 3 antibodies that, when combined, recognize T antigen proteins of all HPyVs. We validated detection characteristics of the antibody cocktail by immunoblotting and immunohistochemistry and screened 1,184 cases, including well-defined diseases and tumor tissue microarrays. This assay robustly detected MCV, TSV, JCV, and HPyV7 in etiologically related diseases. We further identified WU polyomavirus in a case of chronic lymphocytic lymphoma-associated bronchitis. Except for scattered, incidentally infected cells in 5% of lung squamous cell carcinomas and colon adenocarcinomas, a broad panel of tumor tissues was largely negative for infection by any HPyV. This method eliminates known HPyVs as suspected causes of cancers investigated in this study. Pan-HPyV survey can be applied to identify diseases associated with recently discovered polyomaviruses.

Authors

Tuna Toptan, Samuel A. Yousem, Jonhan Ho, Yuki Matsushima, Laura P. Stabile, Maria-Teresa Fernández-Figueras, Rohit Bhargava, Akihide Ryo, Patrick S. Moore, Yuan Chang

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Figure 1

Detection of human polyomavirus early region proteins in HEK293 cells.

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Detection of human polyomavirus early region proteins in HEK293 cells.
(...
(A) Splicing arrangement of simian virus 40 (SV40) and JC virus (JCV) T antigens. Rectangles indicate the coding sequences: dark gray rectangles represent exon 1 and the light gray rectangles represent exon 2. Dotted lines represent the intron sequences. The PAb416 diagnostic antibody recognizes an epitope within aa 83–126 of exon 2 that is conserved in most of the human polyomaviruses (HPyVs). Different splicing events in JCV T antigen give rise to truncated forms of large T (LT), including T′165, T′136, and T′135. (B) Early gene expression of HPyVs was analyzed by Western blotting (WB) using anti-Flag, PAb416, Xt7, or 2t2. Observed sizes of LT from different HPyVs vary between 75 and 125 kDa. HPyV T antigen splice variants are between 15 and 60 kDa (HPyV T antigen splice variants are indicated by a plus sign in C). PAb416 antibody detects early proteins from BKV, JCV, KIV, WUV, HPyV6, HPyV7, TSV, HPyV10, and HPyV11. Xt7 antibody detects early region proteins from HPyV6, HPyV7, TSV, HPyV9, HPyV10, HPyV11, HPyV12, and NJPyV and detects KIV, MCV, and JCV splice forms weakly. 2t2 antibody detects MCV LT and the 57 kDa T. (C) The predicted sizes of HPyV T antigens (in kDa) are shown for respective immunoblots. sT, small T; BKV, BK virus; JCV, JC virus; KIV, KI virus; WUV, WU virus; MCV, Merkel cell polyomavirus; TSV, trichodysplasia-spinulosa virus; NJPyV, New Jersey polyomavirus.

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