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CRISPR screening identifies DTX4 governing alveolar macrophage cholesterol efflux in pulmonary alveolar proteinosis
Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang
Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang
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Research Article Metabolism Pulmonology

CRISPR screening identifies DTX4 governing alveolar macrophage cholesterol efflux in pulmonary alveolar proteinosis

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Abstract

Pulmonary alveolar proteinosis (PAP) is a rare pulmonary syndrome characterized by impaired surfactant clearance, driven by dysfunctional cholesterol efflux in alveolar macrophages (AMs). However, the molecular determinants governing AM cholesterol homeostasis remain incompletely defined. Here, through a genome-wide CRISPR screen in foamy macrophages and bulk RNA sequencing of AMs from PAP patients, we identify DTX4 as a pivotal regulator of cholesterol efflux in AMs. In mice, AAV-mediated silencing of DTX4 led to excessive AM lipid accumulation, exacerbated proteinosis, increased lung opacities, and deteriorated pulmonary function. Similarly, DTX4 depletion in primary AMs impaired cholesterol efflux and promoted intracellular lipid deposition. Conversely, AM-specific overexpression of DTX4 in the Csf2ra–/– PAP model markedly alleviated lipid accumulation, mitigated alveolar proteinosis, restored lung densities, and rescued pulmonary function. Mechanistically, DTX4 stabilizes the GM-CSF receptor via an E3-independent interaction to sustain JAK2/STAT5 signaling, which reciprocally maintains DTX4 transcription. This positive-feedback loop drives PPARγ expression, and its disruption in PAP impairs cholesterol efflux, a defect partially reversible by ectopic PPARγ expression. Collectively, our findings identify DTX4 as a central orchestrator of AM cholesterol efflux and surfactant homeostasis, positioning it as a promising therapeutic target for PAP.

Authors

Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang

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Figure 2

CRISPR screen identifies regulators of cholesterol efflux in AMs.

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CRISPR screen identifies regulators of cholesterol efflux in AMs.
(A) Sc...
(A) Schematic of the CRISPR activation screen workflow. (B) Venn diagram showing the overlap of downregulated genes from 3 sequencing datasets. (C) Hockey stick plot showing top downregulated genes in BODIPYhi AMs identified by MAGeCK analysis. (D) Scatterplot showing the significance of robust rank aggregation (RRA) scores for each gene in BODIPYlo versus BODIPYhi AMs. (E–G) mRNA expression levels of indicated genes across different comparison groups (E and F, n = 3; G, n = 5). (H and I) Protein expression levels of indicated targets across comparison groups (H, n = 3; I, n = 5). (J) Confocal images showing DTX4 (red) and neutral lipids (BODIPY 493/503, green) in different groups. Nuclei were stained with Hoechst 33342. Scale bars: 30 μm. Statistical comparisons were performed using a 2-tailed unpaired t test; P values are indicated (*P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001).

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