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CRISPR screening identifies DTX4 governing alveolar macrophage cholesterol efflux in pulmonary alveolar proteinosis
Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang
Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang
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Research Article Metabolism Pulmonology

CRISPR screening identifies DTX4 governing alveolar macrophage cholesterol efflux in pulmonary alveolar proteinosis

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Abstract

Pulmonary alveolar proteinosis (PAP) is a rare pulmonary syndrome characterized by impaired surfactant clearance, driven by dysfunctional cholesterol efflux in alveolar macrophages (AMs). However, the molecular determinants governing AM cholesterol homeostasis remain incompletely defined. Here, through a genome-wide CRISPR screen in foamy macrophages and bulk RNA sequencing of AMs from PAP patients, we identify DTX4 as a pivotal regulator of cholesterol efflux in AMs. In mice, AAV-mediated silencing of DTX4 led to excessive AM lipid accumulation, exacerbated proteinosis, increased lung opacities, and deteriorated pulmonary function. Similarly, DTX4 depletion in primary AMs impaired cholesterol efflux and promoted intracellular lipid deposition. Conversely, AM-specific overexpression of DTX4 in the Csf2ra–/– PAP model markedly alleviated lipid accumulation, mitigated alveolar proteinosis, restored lung densities, and rescued pulmonary function. Mechanistically, DTX4 stabilizes the GM-CSF receptor via an E3-independent interaction to sustain JAK2/STAT5 signaling, which reciprocally maintains DTX4 transcription. This positive-feedback loop drives PPARγ expression, and its disruption in PAP impairs cholesterol efflux, a defect partially reversible by ectopic PPARγ expression. Collectively, our findings identify DTX4 as a central orchestrator of AM cholesterol efflux and surfactant homeostasis, positioning it as a promising therapeutic target for PAP.

Authors

Zimu Wang, Jingwei Shi, Xu Ye, Xinye Xia, Huihui Zhu, Qi Li, Min Chen, Yichao Zhao, Yingwei Zhang, Mengshu Cao, Yonglong Xiao, Xinmei Huang

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Figure 1

Transcriptomic analysis of AMs in PAP.

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Transcriptomic analysis of AMs in PAP.
(A) Schematic overview of AM isol...
(A) Schematic overview of AM isolation and RNA-seq workflow from autoimmune PAP (aPAP) patients and control donors (n = 3). (B) Pie chart showing the distribution of differentiallyexpressed genes (DEGs) identified by RNA-seq. (C) Volcano plot of DEGs between PAP and control AMs; adjusted P values (Padj) were used to determine significance. (D) Gene Ontology (GO) enrichment analysis of DEGs, presented as a bubble plot. (E) Heatmap showing expression levels of genes involved in cholesterol homeostasis and cholesterol response in PAP versus control AMs. (F and G) Gene set enrichment analysis (GSEA) demonstrating altered expression of gene sets related to cholesterol transport (F) and metabolism (G) in PAP. (H and I) Schematic of AM sorting based on BODIPY fluorescence (BODIPYhi and BODIPYlo) from aPAP patients followed by RNA-seq (n = 3). (J) Pie chart of DEGs identified between BODIPYhi and BODIPYlo AMs. (K) Volcano plot of DEGs between BODIPYhi and BODIPYlo AMs; significance was determined using adjusted P values (Padj).

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