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Faithful modeling of terminal CD8+T cell dysfunction and epigenetic stabilization in vitro
Amir Yousif, … , Eugene M. Oltz, Hazem E. Ghoneim
Amir Yousif, … , Eugene M. Oltz, Hazem E. Ghoneim
Published October 8, 2025
Citation Information: JCI Insight. 2025;10(19):e191220. https://doi.org/10.1172/jci.insight.191220.
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Research Article Immunology Oncology

Faithful modeling of terminal CD8+T cell dysfunction and epigenetic stabilization in vitro

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Abstract

Epigenetic scarring of terminally dysfunctional (TDysf) CD8+ T cells hinders long-term protection and response to immune checkpoint blockade during chronic infections and cancer. We developed a faithful in vitro model for CD8+ T cell terminal dysfunction as a platform to advance T cell immunotherapy. Using TCR-transgenic CD8+ T cells, we found that 1-week peptide stimulation, mimicking conditions in previous models, failed to induce a stable exhaustion program. In contrast, prolonged stimulation for 2–3 weeks induced T cell dysfunction but triggered activation-induced cell death, precluding long-term investigation of exhaustion programs. To better mimic in vivo exhaustion, we provided post-effector, chronic TGF-β1 signals, enabling survival of chronically stimulated CD8+ T cells for over 3 weeks. These conditions induced a state of terminal dysfunction, marked by a stable loss of effector, cytotoxicity, and memory programs, along with mitochondrial stress and impaired protein translation. Importantly, transcriptomic and epigenetic analyses verified the development of terminal exhaustion-specific signatures in TDysf cells. Adoptive transfer of TDysf cells revealed their inability to recall effector functions or proliferate after acute lymphocytic choriomeningitis virus rechallenge. This tractable model system enables investigation of molecular pathways driving T cell terminal dysfunction and discovery of therapeutic targets for cancer or chronic infections.

Authors

Amir Yousif, Abbey A. Saadey, Ava Lowin, Asmaa M. Yousif, Ankita Saini, Madeline R. Allison, Kelley Ptak, Eugene M. Oltz, Hazem E. Ghoneim

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Figure 1

Acute antigenic stimulation for 1 week fails to induce a dysfunctional program in CD8+ T cells.

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Acute antigenic stimulation for 1 week fails to induce a dysfunctional p...
(A) Schematic for in vitro stimulation of GP33-specific P14 CD8+ T cells isolated from spleens of naive mice. P14 cells were activated with anti-CD3 and anti-CD28 day 0–2, followed by resting (“Acute-2d”), or by 2 rounds of GP33 peptide stimulation day 2–7 followed by resting until day 19 (“Acute-7d”). (B) Representative FACS plots showing expression of PD-1 and CD44 or Tim3 on P14 cells from day 0 to day 2 and summary bar graphs showing frequency of PD-1+CD44+ or PD-1+Tim3+ P14 cells on days 0 and 2. (C) Longitudinal tracking of % PD-1+CD44+ P14 cells for either Acute-2d (bottom line, green) or Acute-7d (top line, blue) or (D) % PD-1+Tim3+ P14 cells from day 0–19. (E) Expression levels (shown by geometric mean fluorescence intensity, gMFI) of CD62L from Acute-2d or Acute-7d P14 cells on days 7 and 19. (F) Bar graphs showing % of CD62L+Ccr7+, total CD62L+, and total Ccr7+ P14 cells on day 19. (G) Schematic for adoptive transfer of 100K Acute-2d or Acute-7d in vitro–stimulated P14 cells in congenically distinct C57BL/6 mice on day 19, followed by acute LCMV infection and analysis day 6–7 postinfection. (H) Fold expansion of P14 cells relative to endogenous GP33-specific CD8+ T cells on day 6–7 postinfection. (I) Representative FACS plots and % Ifnγ+CD107a+ P14 cells after ex vivo GP33 peptide restimulation of splenocytes. For B–F n = 4 biological replicates, representative of 2 to 3 independent experiments. For H and I, data were pooled from 2 independent experiments, each with n = 3–4 biological replicates per group. *P < 0.05, ***P < 0.001, ****P < 0.0001. Comparisons were determined by 2-way ANOVA (C and D) or Mann–Whitney U test (unpaired, 2-sided) (B, E, F, H, and I). Error bars indicate mean ± SEM.

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