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High-dimensional analysis of NK cells in kidney transplantation uncovers subsets associated with antibody-independent graft dysfunction
Dan Fu Ruan, Miguel Fribourg, Yuko Yuki, Yeon-Hwa Park, Maureen P. Martin, Haocheng Yu, Geoffrey C. Kelly, Brian Lee, Ronaldo M. de Real, Rachel Lee, Daniel Geanon, Seunghee Kim-Schulze, Nicholas Chun, Paolo Cravedi, Mary Carrington, Peter S. Heeger, Amir Horowitz
Dan Fu Ruan, Miguel Fribourg, Yuko Yuki, Yeon-Hwa Park, Maureen P. Martin, Haocheng Yu, Geoffrey C. Kelly, Brian Lee, Ronaldo M. de Real, Rachel Lee, Daniel Geanon, Seunghee Kim-Schulze, Nicholas Chun, Paolo Cravedi, Mary Carrington, Peter S. Heeger, Amir Horowitz
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Research Article Immunology Transplantation

High-dimensional analysis of NK cells in kidney transplantation uncovers subsets associated with antibody-independent graft dysfunction

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Abstract

Natural killer (NK) cells respond to diseased and allogeneic cells through NKG2A/HLA-E or killer cell immunoglobulin-like receptor (KIR)/HLA-ABC interactions. Correlations between HLA/KIR disparities and kidney transplant pathology suggest an antibody-independent pathogenic role for NK cells in transplantation, but the mechanisms remain unclear. Using CyTOF to characterize recipient peripheral NK cell phenotypes and function, we observed diverse NK cell subsets among participants who responded heterogeneously to allo-stimulators. NKG2A+KIR+ NK cells responded more vigorously than other subsets, and this heightened response persisted after kidney transplantation despite immunosuppression. In test and validation sets from 2 clinical trials, pretransplant donor-induced release of cytotoxicity mediator Ksp37 by NKG2A+ NK cells correlated with reduced long-term allograft function. Separate analyses showed that Ksp37 gene expression in allograft biopsies lacking histological rejection correlated with death-censored graft loss. Our findings support an antibody-independent role for NK cells in transplant injury and support further testing of pretransplant, donor-reactive, NK cell–produced Ksp37 as a risk-assessing, transplantation biomarker.

Authors

Dan Fu Ruan, Miguel Fribourg, Yuko Yuki, Yeon-Hwa Park, Maureen P. Martin, Haocheng Yu, Geoffrey C. Kelly, Brian Lee, Ronaldo M. de Real, Rachel Lee, Daniel Geanon, Seunghee Kim-Schulze, Nicholas Chun, Paolo Cravedi, Mary Carrington, Peter S. Heeger, Amir Horowitz

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Figure 6

Increased expression of FGFBP2 in allograft rejection and graft failure.

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Increased expression of FGFBP2 in allograft rejection and graft failure....
Microarray gene expression of FGFBP2 was extracted from GEO GSE36059, GSE50058, and GSE21374. (A) Kaplan-Meier plot shows time to graft failure in subset of non-rejecting recipients from GSE21374 with either high (n = 30) or low (n = 176) expression of FGFBP2. High and low expression of FGFBP2 was determined by StepMiner, as previously reported (43). (B) FGFBP2 expression in GSE21374 was higher in histologically defined rejection (n = 76) than non-rejection (n = 206). (C) FGFBP2 expression in GSE36059 was higher in histologically defined TCMR (n = 35), ABMR (n = 65), and mixed rejection (n = 22) than non-rejection (n = 289). (D) FGFBP2 expression in GSE50058 was higher in histologically defined acute rejection (n = 43) than non-rejection (n = 58). P value in A was calculated by log-rank test; P values in B–D reflect Wilcoxon’s test with Bonferroni’s correction.

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