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BET inhibition reforms the immune microenvironment and alleviates T cell dysfunction in chronic lymphocytic leukemia
Audrey L. Smith, Sydney A. Skupa, Alexandria P. Eiken, Timothy E. Reznicek, Elizabeth Schmitz, Nolan Williams, Dalia Y. Moore, Christopher R. D’Angelo, Avyakta Kallam, Matthew A. Lunning, R. Gregory Bociek, Julie M. Vose, Eslam Mohamed, Anna R. Mahr, Paul W. Denton, Ben Powell, Gideon Bollag, M. Jordan Rowley, Dalia El-Gamal
Audrey L. Smith, Sydney A. Skupa, Alexandria P. Eiken, Timothy E. Reznicek, Elizabeth Schmitz, Nolan Williams, Dalia Y. Moore, Christopher R. D’Angelo, Avyakta Kallam, Matthew A. Lunning, R. Gregory Bociek, Julie M. Vose, Eslam Mohamed, Anna R. Mahr, Paul W. Denton, Ben Powell, Gideon Bollag, M. Jordan Rowley, Dalia El-Gamal
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Research Article Immunology Oncology

BET inhibition reforms the immune microenvironment and alleviates T cell dysfunction in chronic lymphocytic leukemia

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Abstract

Redundant tumor microenvironment (TME) immunosuppressive mechanisms and epigenetic maintenance of terminal T cell exhaustion greatly hinder functional antitumor immune responses in chronic lymphocytic leukemia (CLL). Bromodomain and extraterminal (BET) proteins regulate key pathways contributing to CLL pathogenesis and TME interactions, including T cell function and differentiation. Herein, we report that blocking BET protein function alleviates immunosuppressive networks in the CLL TME and repairs inherent CLL T cell defects. The pan-BET inhibitor OPN-51107 reduced exhaustion-associated cell signatures resulting in improved T cell proliferation and effector function in the Eμ-TCL1 splenic TME. Following BET inhibition (BET-i), TME T cells coexpressed significantly fewer inhibitory receptors (IRs) (e.g., PD-1, CD160, CD244, LAG3, VISTA). Complementary results were witnessed in primary CLL cultures, wherein OPN-51107 exerted proinflammatory effects on T cells, regardless of leukemic cell burden. BET-i additionally promotes a progenitor T cell phenotype through reduced expression of transcription factors that maintain terminal differentiation and increased expression of TCF-1, at least in part through altered chromatin accessibility. Moreover, direct T cell effects of BET-i were unmatched by common targeted therapies in CLL. This study demonstrates the immunomodulatory action of BET-i on CLL T cells and supports the inclusion of BET inhibitors in the management of CLL to alleviate terminal T cell dysfunction and potentially enhance tumoricidal T cell activity.

Authors

Audrey L. Smith, Sydney A. Skupa, Alexandria P. Eiken, Timothy E. Reznicek, Elizabeth Schmitz, Nolan Williams, Dalia Y. Moore, Christopher R. D’Angelo, Avyakta Kallam, Matthew A. Lunning, R. Gregory Bociek, Julie M. Vose, Eslam Mohamed, Anna R. Mahr, Paul W. Denton, Ben Powell, Gideon Bollag, M. Jordan Rowley, Dalia El-Gamal

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Figure 6

BET inhibition directly influences CLL patient–derived T cell function and state.

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BET inhibition directly influences CLL patient–derived T cell function a...
(A) CLL patient–derived T cells treated with the OPN-51107 (OPN5; 0.1-0.5 μM), ibrutinib (IBR; 1 μM), or vehicle equivalent (VEH; DMSO) for 48 hours, stimulated with PMA/ionomycin for the final 6 hours before being evaluated by flow cytometry for percentage of IL-2+ and IFN-γ+TNF-α+ CD8+ T cells, normalized to VEH (n = 6). (B) CLL patient–derived CD8+ T cells treated with the indicated inhibitors for 48 hours before being cocultured with anti-CD3 coated MEC-1 CLL cells (n = 7). The number of dead MEC-1 cells per 100 viable CD8+ T cells following 18 hours of coculture is shown. (C–F) CLL patient–derived T cells treated with the indicated inhibitors in the presence of anti-CD3/anti-CD28 stimuli for 48 hours (n = 6). (C) Percentages of CD8+ T cells expressing immune inhibitory receptors (IRs) PD-1, LAG3, CTLA4, TIM3, and TIGIT, normalized to VEH. (D) Distribution of CD8+ T cells into progenitor exhausted (TPEX; PD-1int/TIM3lo/–) and terminally exhausted (TTEX; PD-1hi/TIM3hi) subsets. (E) Percentages of stem-like (Stem; PD-1+TIM3–TCF1+) and terminally differentiated (TD; PD-1+TIM3+TCF1–) CD8+ T cells. (F) Percentages of CD8+ T cells expressing transcription factors (TFs) EOMES, RUNX3, T-BET, TCF1, and TOX, normalized to VEH. Data are represented as mean ± SEM. Significant difference from VEH was calculated using 1-way ANOVA. *P < 0.05, **P < 0.01.

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