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Pregnancy dedifferentiates memory CD8+ T cells into hypofunctional cells with exhaustion-enriched programs
Jared M. Pollard, Grace Hynes, Dengping Yin, Malay Mandal, Fotini Gounari, Maria-Luisa Alegre, Anita S. Chong
Jared M. Pollard, Grace Hynes, Dengping Yin, Malay Mandal, Fotini Gounari, Maria-Luisa Alegre, Anita S. Chong
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Research Article Immunology Transplantation

Pregnancy dedifferentiates memory CD8+ T cells into hypofunctional cells with exhaustion-enriched programs

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Abstract

Alloreactive memory, unlike naive, CD8+ T cells resist transplantation tolerance protocols and are a critical barrier to long-term graft acceptance in the clinic. We here show that semiallogeneic pregnancy successfully reprogrammed memory fetus/graft-specific CD8+ T cells (TFGS) toward hypofunction. Female C57BL/6 mice harboring memory CD8+ T cells generated by the rejection of BALB/c skin grafts and then mated with BALB/c males achieved rates of pregnancy comparable with naive controls. Postpartum CD8+ TFGS from skin-sensitized dams upregulated expression of T cell exhaustion (TEX) markers (Tox, Eomes, PD-1, TIGIT, and Lag3). Transcriptional analysis corroborated an enrichment of canonical TEX genes in postpartum memory TFGS and revealed a downregulation of a subset of memory-associated transcripts. Strikingly, pregnancy induced extensive epigenetic modifications of exhaustion- and memory-associated genes in memory TFGS, whereas minimal epigenetic modifications were observed in naive TFGS. Finally, postpartum memory TFGS durably expressed the exhaustion-enriched phenotype, and their susceptibility to transplantation tolerance was significantly restored compared with memory TFGS. These findings advance the concept of pregnancy as an epigenetic modulator inducing hypofunction in memory CD8+ T cells that has relevance not only for pregnancy and transplantation tolerance, but also for tumor immunity and chronic infections.

Authors

Jared M. Pollard, Grace Hynes, Dengping Yin, Malay Mandal, Fotini Gounari, Maria-Luisa Alegre, Anita S. Chong

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Figure 2

Pregnancy induces broad transcriptional modification in memory OVA-specific TFGS.

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Pregnancy induces broad transcriptional modification in memory OVA-speci...
(A) Sorting strategy for OVA:Kb-specific TFGS from each experimental group into their most prevalent phenotypic subsets as defined by FlowSOM (in Figure 1I). TFGS were acquired and flow sorted from 2 biologically independent experiments; n = 3–5 per group, with technical replicates for each biological sample. (B) Gating strategy for each cluster of OVA:Kb-specific TFGS. (C) Representative plots showing the distributions of C1+C4, C5, and C7 within bulk or OVA:Kb-specific R+P CD8+ T cells. Percentage of each cell cluster is comparable to the distribution of our FlowSOM analysis in Figure 1H for the experimental groups. (D and E) Row-normalized RNA-Seq expression and box plots of normalized RNA-Seq read counts for key exhaustion and anergy markers corresponding to Figure 1I. Each dot in box plots or UMAP, and each column in the heatmap, indicates an individual mouse. P values (in E) were determined by Kruskal-Wallis 1-way ANOVA with Dunn’s post hoc test. *P < 0.05; ***P < 0.001; ****P < 0.0001. (F) UMAP comparing all TFGS subsets analyzed by RNA-Seq. (G) Venn diagram of DEGs unique to R+P C7 TFGS, R+P C5 TFGS, and shared between both subsets.

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