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MAFB shapes human monocyte–derived macrophage response to SARS-CoV-2 and controls severe COVID-19 biomarker expression
Miriam Simón-Fuentes, Israel Ríos, Cristina Herrero, Fátima Lasala, Nuria Labiod, Joanna Luczkowiak, Emilia Roy-Vallejo, Sara Fernández de Córdoba-Oñate, Pablo Delgado-Wicke, Matilde Bustos, Elena Fernández-Ruiz, Maria Colmenares, Amaya Puig-Kröger, Rafael Delgado, Miguel A. Vega, Ángel L. Corbí, Ángeles Domínguez-Soto
Miriam Simón-Fuentes, Israel Ríos, Cristina Herrero, Fátima Lasala, Nuria Labiod, Joanna Luczkowiak, Emilia Roy-Vallejo, Sara Fernández de Córdoba-Oñate, Pablo Delgado-Wicke, Matilde Bustos, Elena Fernández-Ruiz, Maria Colmenares, Amaya Puig-Kröger, Rafael Delgado, Miguel A. Vega, Ángel L. Corbí, Ángeles Domínguez-Soto
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Research Article COVID-19 Immunology

MAFB shapes human monocyte–derived macrophage response to SARS-CoV-2 and controls severe COVID-19 biomarker expression

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Abstract

Monocyte-derived macrophages, the major source of pathogenic macrophages in COVID-19, are oppositely instructed by macrophage CSF (M-CSF) or granulocyte macrophage CSF (GM-CSF), which promote the generation of antiinflammatory/immunosuppressive MAFB+ (M-MØ) or proinflammatory macrophages (GM-MØ), respectively. The transcriptional profile of prevailing macrophage subsets in severe COVID-19 led us to hypothesize that MAFB shapes the transcriptome of pulmonary macrophages driving severe COVID-19 pathogenesis. We have now assessed the role of MAFB in the response of monocyte-derived macrophages to SARS-CoV-2 through genetic and pharmacological approaches, and we demonstrate that MAFB regulated the expression of the genes that define pulmonary pathogenic macrophages in severe COVID-19. Indeed, SARS-CoV-2 potentiated the expression of MAFB and MAFB-regulated genes in M-MØ and GM-MØ, where MAFB upregulated the expression of profibrotic and neutrophil-attracting factors. Thus, MAFB determines the transcriptome and functions of the monocyte-derived macrophage subsets that underlie pulmonary pathogenesis in severe COVID-19 and controls the expression of potentially useful biomarkers for COVID-19 severity.

Authors

Miriam Simón-Fuentes, Israel Ríos, Cristina Herrero, Fátima Lasala, Nuria Labiod, Joanna Luczkowiak, Emilia Roy-Vallejo, Sara Fernández de Córdoba-Oñate, Pablo Delgado-Wicke, Matilde Bustos, Elena Fernández-Ruiz, Maria Colmenares, Amaya Puig-Kröger, Rafael Delgado, Miguel A. Vega, Ángel L. Corbí, Ángeles Domínguez-Soto

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Figure 4

SARS-CoV-2 infection of human monocyte–derived macrophages upregulates the expression of MAFB and MAFB-dependent genes.

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SARS-CoV-2 infection of human monocyte–derived macrophages upregulates t...
(A) Schematic representation of the generation of SARS-CoV-2–infected M-MØ (M-MØ SARS-CoV-2) and GM-MØ (GM-MØ SARS-CoV-2), and their corresponding untreated controls at different times before RNA isolation and RNA-Seq (GSE207840) using 4 independent samples. (B) Number of differentially expressed genes ([log2FC] > 1; Padj < 0.05) in SARS-CoV-2–infected macrophages (M-MØ SARS-CoV-2 and GM-MØ SARS-CoV-2) relative to uninfected controls at 4, 12, and 36 hours. Gray columns indicate the number of genes regulated in both M-MØ and GM-MØ. (C) MAFB gene expression in SARS-CoV-2–exposed or untreated M-MØ and GM-MØ at the indicated time points after viral infection and as determined in RNA-Seq experiments (GSE207840). Padj values (relative to untreated samples) are indicated in each case. Statistical significance was calculated using the R-package DESeq2. (D) GSEA of MAFB-dependent genes (GSE155719) (upper panel) and the 75-gene set (GSE190589) (lower panel) on the ranked comparison of the transcriptomes of GM-MØ SARS-CoV-2 versus untreated GM-MØ, 36 hours after viral exposure. (E) Summary of GSEA of MAFB-dependent genes (GSE155719) and the 75-gene set (GSE190589) on the ranked comparison of the transcriptomes of M-MØ SARS-CoV-2 versus untreated M-MØ (upper panel) or GM-MØ SARS-CoV-2 versus untreated GM-MØ (lower panel), determined at 4, 12, and 36 hours after viral exposure. FDR q values are indicated in each case. (F) MAFB protein levels in M-MØ SARS-CoV-2 (left panel) and GM-MØ SARS-CoV-2 (right panel) at the indicated time points after exposure to SARS-CoV-2 (SARS) or to SARS-CoV-2 VLPs, as determined by Western blot. Vinculin protein levels were determined as protein loading control. Mean ± SEM of the MAFB/vinculin protein ratios from 4 independent experiments are shown (*P < 0.05; **P < 0.01). Statistical significance was calculated using 1-way ANOVA with Tukey multiple-comparison test. A representative Western blot experiment is shown in each case.

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