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OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma
Trang T.T. Nguyen, … , Peter Canoll, Markus D. Siegelin
Trang T.T. Nguyen, … , Peter Canoll, Markus D. Siegelin
Published March 14, 2024
Citation Information: JCI Insight. 2024;9(8):e172565. https://doi.org/10.1172/jci.insight.172565.
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Research Article Oncology

OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma

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Abstract

Glioblastoma (GBM) remains an incurable disease, requiring more effective therapies. Through interrogation of publicly available CRISPR and RNAi library screens, we identified the α-ketoglutarate dehydrogenase (OGDH) gene, which encodes an enzyme that is part of the tricarboxylic acid (TCA) cycle, as essential for GBM growth. Moreover, by combining transcriptome and metabolite screening analyses, we discovered that loss of function of OGDH by the clinically validated drug compound CPI-613 was synthetically lethal with Bcl-xL inhibition (genetically and through the clinically validated BH3 mimetic, ABT263) in patient-derived xenografts as well neurosphere GBM cultures. CPI-613–mediated energy deprivation drove an integrated stress response with an upregulation of the BH3-only domain protein, Noxa, in an ATF4-dependent manner, as demonstrated by genetic loss-of-function experiments. Consistently, silencing of Noxa attenuated cell death induced by CPI-613 in model systems of GBM. In patient-derived xenograft models of GBM in mice, the combination treatment of ABT263 and CPI-613 suppressed tumor growth and extended animal survival more potently than each compound on its own. Therefore, combined inhibition of Bcl-xL along with disruption of the TCA cycle might be a treatment strategy for GBM.

Authors

Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin

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Figure 3

CPI-613 treatment reduces the labeling of TCA cycle metabolites from glucose and the oxygen consumption rate in GBM cells.

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CPI-613 treatment reduces the labeling of TCA cycle metabolites from glu...
(A) KNS42 cells were treated with CPI-613 for 24 hours, subjected to RNA-seq, and followed by GSEA. NES, normalized enrichment score; FDR, false discovery rate. (B and C) KNS42 cells were treated with CPI-613 for 24 hours and were processed for polar metabolite LC/MS analysis. The metabolite enrichment analysis was performed by using MetaboAnalyst (https://www.metaboanalyst.ca/). Shown is the enrichment pathway analysis and the citric acid cycle is highlighted in red. FC, fold change. (D–F) KNS42 cells were treated with 100 μM CPI-613 in DMEM containing 25 mM U-13C6-glucose, 4 mM glutamine, and 1.5% dialyzed FBS for 24 hours. Shown are fractions of the isotopologues for each metabolite (n = 3 per group). (G) GBM22 cells were transduced with either nontargeting shRNA (shNT) or shRNAs against OGDH. The transduced cells were cultured in DMEM containing 25 mM U-13C6-glucose, 4 mM glutamine, and 10% dialyzed FBS for 24 hours (n = 3 per group). (H–K) KNS42 and GBM22 cells were treated with CPI-613 (CPI) for 24 hours and subjected to extracellular flux analysis to analyze maximal respiration and coupled respiration in J and K. OM, oligomycin; FCCP, carbonylcyanide-4 (trifluoromethoxy) phenylhydrazone; R/A, rotenone and antimycin (n = 3 per group). Statistical significance was assessed by 2-tailed Student’s t test (D–F, J, and K) or 1-way ANOVA with Dunnett’s multiple-comparison test (G). Data are shown as mean ± SD. ***P < 0.001; ****P < 0.0001.

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