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OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma
Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin
Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin
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Research Article Oncology

OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma

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Abstract

Glioblastoma (GBM) remains an incurable disease, requiring more effective therapies. Through interrogation of publicly available CRISPR and RNAi library screens, we identified the α-ketoglutarate dehydrogenase (OGDH) gene, which encodes an enzyme that is part of the tricarboxylic acid (TCA) cycle, as essential for GBM growth. Moreover, by combining transcriptome and metabolite screening analyses, we discovered that loss of function of OGDH by the clinically validated drug compound CPI-613 was synthetically lethal with Bcl-xL inhibition (genetically and through the clinically validated BH3 mimetic, ABT263) in patient-derived xenografts as well neurosphere GBM cultures. CPI-613–mediated energy deprivation drove an integrated stress response with an upregulation of the BH3-only domain protein, Noxa, in an ATF4-dependent manner, as demonstrated by genetic loss-of-function experiments. Consistently, silencing of Noxa attenuated cell death induced by CPI-613 in model systems of GBM. In patient-derived xenograft models of GBM in mice, the combination treatment of ABT263 and CPI-613 suppressed tumor growth and extended animal survival more potently than each compound on its own. Therefore, combined inhibition of Bcl-xL along with disruption of the TCA cycle might be a treatment strategy for GBM.

Authors

Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin

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Figure 1

Genetic or pharmacological inhibition of OGDH, a key enzyme of the TCA cycle, reduces the growth of GBM cultures.

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Genetic or pharmacological inhibition of OGDH, a key enzyme of the TCA c...
(A and B) CRISPR and RNAi library screening (obtained and analyzed from the DepMAP database) points toward increased reliance of GBM cells on several TCA cycle enzymes, especially the OGDH gene. (C) KNS42, GBM22, and GBM12 cells were transduced with lentiviral vectors containing either nontargeting shRNA (shNT) or shRNAs against OGDH. Cellular viability analysis was performed for up to 4 days (n = 4 per group). FC, fold change. (D) Western blots of KNS42, GBM22, and GBM12 cells transduced with lentiviral vectors containing either shNT or shRNAs against OGDH. Actin was used as a loading control. (E) GBM22, GBM12, KNS42, NCH644, and astrocytes were treated with increasing concentrations of CPI-613 for 72 hours, labeled with Annexin V/PI dye, and analyzed by flow cytometry for apoptosis induction (n = 3 per group). (F) Shown is the survival curve of patients (wild-type and mutated IDH) with high or low mRNA levels of OGDH from TCGA database. Cutoff point (maximally selected rank statistics) was calculated through GlioVis (http://gliovis.bioinfo.cnio.es/ Last accessed March 26, 2024.), which yielded a cutpoint of 11.3 for mRNA. High levels of OGDH correlate with a worse overall survival in patients. (G and H) GBM22 cells were transduced with lentiviral vectors containing either shNT or shRNAs against OGDH, and were implanted in the right striatum of nude mice. (G) Representative MRI images of brain tumors from the experiment in H are shown (Bruker BioSpec, 9.4 Tesla). (H) The log-rank test was used to assess statistical significance (n = 5 in shNT and n = 7 in shODGH-80). Median survival was 40 days in GBM22 with shNT and 56 days in GBM22 with shOGDH-80. Statistical significance was assessed by 1-way ANOVA with Dunnett’s multiple-comparison test (E) or 2-tailed Student’s t test (H). Data are shown as mean ± SD. ****P < 0.001.

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