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Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
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Research Article COVID-19 Immunology

Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine

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Abstract

Although SARS-CoV-2 evolution seeds a continuous stream of antibody-evasive viral variants, COVID-19 mRNA vaccines provide robust protection against severe disease and hospitalization. Here, we asked whether mRNA vaccine–induced memory T cells limit lung SARS-CoV-2 replication and severe disease. We show that mice and humans receiving booster BioNTech mRNA vaccine developed potent CD8 T cell responses and showed similar kinetics of expansion and contraction of granzyme B/perforin-expressing effector CD8 T cells. Both monovalent and bivalent mRNA vaccines elicited strong expansion of a heterogeneous pool of terminal effectors and memory precursor effector CD8 T cells in spleen, inguinal and mediastinal lymph nodes, pulmonary vasculature, and most surprisingly in the airways, suggestive of systemic and regional surveillance. Furthermore, we document that: (a) CD8 T cell memory persists in multiple tissues for > 200 days; (b) following challenge with pathogenic SARS-CoV-2, circulating memory CD8 T cells rapidly extravasate to the lungs and promote expeditious viral clearance, by mechanisms that require CD4 T cell help; and (c) adoptively transferred splenic memory CD8 T cells traffic to the airways and promote lung SARS-CoV-2 clearance. These findings provide insights into the critical role of memory T cells in preventing severe lung disease following breakthrough infections with antibody-evasive SARS-CoV-2 variants.

Authors

Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh

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Figure 6

CD8 and CD4 T cells are necessary for mRNA vaccine–induced protective immunity to SARS-CoV-2 in lungs.

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CD8 and CD4 T cells are necessary for mRNA vaccine–induced protective im...
Cohorts of 6- to 8-week-old B6 mice (n = 5–8) were vaccinated twice with the BioNTech monovalent (mono) or the bivalent (bi) mRNA vaccine, as described in Figure 1. At 160 days after booster vaccination, mice were treated i.n. and i.v. with anti-CD4 or anti-CD8 antibodies before and during challenge with the MA10/B.1.351 strain of SARS-CoV-2. On the day 5 after viral challenge, lung cells were stained with Kb/S525 tetramers and antibodies to CD8, CD4, and CD44. (A) FACS plots are gated on total CD8 T cells. Graphs show number of S525-specific CD8+ and activated (CD44+) CD4 T cells in lungs on day 5 after challenge. (B) Graph shows SARS-CoV-2 titers in lungs. (C) Graph shows percentages of Kb/S525-specific CD8 T cells that were found in the lung vasculature or (D) expressed CD69, CD103, CD49a, CD44, or CX3CR1 in lungs of virally challenged mice. Planned comparisons were made using Fisher’s LSD (A, C, and D) or Brown-Forsythe and Welch tests (B). *, **, ***, and **** indicate significance at P < 0.05, < 0.005, < 0.0005, and < 0.00005, respectively.

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