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Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
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Research Article COVID-19 Immunology

Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine

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Abstract

Although SARS-CoV-2 evolution seeds a continuous stream of antibody-evasive viral variants, COVID-19 mRNA vaccines provide robust protection against severe disease and hospitalization. Here, we asked whether mRNA vaccine–induced memory T cells limit lung SARS-CoV-2 replication and severe disease. We show that mice and humans receiving booster BioNTech mRNA vaccine developed potent CD8 T cell responses and showed similar kinetics of expansion and contraction of granzyme B/perforin-expressing effector CD8 T cells. Both monovalent and bivalent mRNA vaccines elicited strong expansion of a heterogeneous pool of terminal effectors and memory precursor effector CD8 T cells in spleen, inguinal and mediastinal lymph nodes, pulmonary vasculature, and most surprisingly in the airways, suggestive of systemic and regional surveillance. Furthermore, we document that: (a) CD8 T cell memory persists in multiple tissues for > 200 days; (b) following challenge with pathogenic SARS-CoV-2, circulating memory CD8 T cells rapidly extravasate to the lungs and promote expeditious viral clearance, by mechanisms that require CD4 T cell help; and (c) adoptively transferred splenic memory CD8 T cells traffic to the airways and promote lung SARS-CoV-2 clearance. These findings provide insights into the critical role of memory T cells in preventing severe lung disease following breakthrough infections with antibody-evasive SARS-CoV-2 variants.

Authors

Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh

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Figure 4

Longitudinal analysis of the kinetics and phenotypes of spike-specific CD8+ T cells in mouse and human PBMCs following administration of the mRNA vaccine.

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Longitudinal analysis of the kinetics and phenotypes of spike-specific C...
C57BL/6 mice (n = 8) were vaccinated twice with monovalent BioNTech mRNA vaccine as described in Figure 1. Human volunteers (n = 5) previously vaccinated with a course of the monovalent mRNA spike vaccine were given a booster of the monovalent BioNTech mRNA vaccine 180 days later. At the indicated time points before and after vaccination, peripheral blood was collected from mice or humans, and mononuclear cells were stained with Kb/S525 tetramer (mice) or a cocktail of HLA-A*02:01 tetramers (specific to following epitopes in the S protein: 61-70, 222-230, 269-277, and 1000-1008) and antibodies to the indicated cell surface or intracellular molecules. (A and D) Graphs show longitudinal analysis of frequencies of H-2Kb/S525-specific (mice, A) or S-specific (humans, D) tetramer binding cells among CD8+ T cells in PBMCs of individual mouse or humans. (B, C, and E) Percentages of S-specific CD8 T cells expressing the indicated molecule(s) in PBMCs of mice (B and C) or humans (E). Data are from 2 independent experiments. Planned comparisons were made using Fisher’s LSD tests. *, **, ***, and **** indicate significance at P < 0.05, < 0.005, < 0.0005, and < 0.00005, respectively. Data in each graph indicate mean ± SEM.

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