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Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh
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Research Article COVID-19 Immunology

Airway surveillance and lung viral control by memory T cells induced by COVID-19 mRNA vaccine

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Abstract

Although SARS-CoV-2 evolution seeds a continuous stream of antibody-evasive viral variants, COVID-19 mRNA vaccines provide robust protection against severe disease and hospitalization. Here, we asked whether mRNA vaccine–induced memory T cells limit lung SARS-CoV-2 replication and severe disease. We show that mice and humans receiving booster BioNTech mRNA vaccine developed potent CD8 T cell responses and showed similar kinetics of expansion and contraction of granzyme B/perforin-expressing effector CD8 T cells. Both monovalent and bivalent mRNA vaccines elicited strong expansion of a heterogeneous pool of terminal effectors and memory precursor effector CD8 T cells in spleen, inguinal and mediastinal lymph nodes, pulmonary vasculature, and most surprisingly in the airways, suggestive of systemic and regional surveillance. Furthermore, we document that: (a) CD8 T cell memory persists in multiple tissues for > 200 days; (b) following challenge with pathogenic SARS-CoV-2, circulating memory CD8 T cells rapidly extravasate to the lungs and promote expeditious viral clearance, by mechanisms that require CD4 T cell help; and (c) adoptively transferred splenic memory CD8 T cells traffic to the airways and promote lung SARS-CoV-2 clearance. These findings provide insights into the critical role of memory T cells in preventing severe lung disease following breakthrough infections with antibody-evasive SARS-CoV-2 variants.

Authors

Brock Kingstad-Bakke, Thomas Cleven, Hailey Bussan, Boyd L. Yount Jr., Ryuta Uraki, Kiyoko Iwatsuki-Horimoto, Michiko Koga, Shinya Yamamoto, Hiroshi Yotsuyanagi, Hongtae Park, Jay S. Mishra, Sathish Kumar, Ralph S. Baric, Peter J. Halfmann, Yoshihiro Kawaoka, M. Suresh

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Figure 1

Peak CD8 T cell responses elicited by mRNA vaccination.

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Peak CD8 T cell responses elicited by mRNA vaccination.
Mice (n = 6) wer...
Mice (n = 6) were administered twice with the BioNTech mRNA vaccine and euthanized at day 5 (D5) or D8 after the booster vaccination. Single-cell suspensions of BAL, lungs, spleen, mediastinal or inguinal lymph nodes were stained with viability dye, followed by Kb/S525 (VNFNFNGL) tetramers in combination with antibodies to CD4, CD8, CD44, CD127, KLRG1. (A) Frequencies among CD8 T cells and numbers of S525-specific CD8 T cells in the indicated tissue are shown in FACS plots and graphs at D5 and D8 after booster vaccination. (B and D) FACS plots and graphs show percentages of indicated subsets among S525+ CD8+ T cells in various tissues. (C) To identify circulating/vascular cells in the lungs, mice were injected i.v. with fluorescent-labeled anti-CD45.2 antibodies, 3 minutes prior to euthanasia (CD45.2+, vascular; CD45.2–, nonvascular). C shows percentages of vascular (CD45.2+) and nonvascular (CD45.2–) cells among S525-specific CD8 T cells. Data represent 4 independent experiments. Planned comparisons were made using unpaired t test for 2-way comparisons (A and C) or Fisher’s LSD test (B and D). *, **, ***, and **** indicate significance at P < 0.05, < 0.005, < 0.0005, and < 0.00005, respectively. Data in each graph indicate mean ± SEM.

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