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Single-cell transcriptomics analysis of proliferative diabetic retinopathy fibrovascular membranes reveals AEBP1 as fibrogenesis modulator
Katia Corano Scheri, Jeremy A. Lavine, Thomas Tedeschi, Benjamin R. Thomson, Amani A. Fawzi
Katia Corano Scheri, Jeremy A. Lavine, Thomas Tedeschi, Benjamin R. Thomson, Amani A. Fawzi
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Research Article Angiogenesis Ophthalmology

Single-cell transcriptomics analysis of proliferative diabetic retinopathy fibrovascular membranes reveals AEBP1 as fibrogenesis modulator

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Abstract

The management of preretinal fibrovascular membranes, a devastating complication of advanced diabetic retinopathy (DR), remains challenging. We characterized the molecular profile of cell populations in these fibrovascular membranes to identify potentially new therapeutic targets. Preretinal fibrovascular membranes were surgically removed from patients and submitted for single-cell RNA-Seq (scRNA-Seq). Differential gene expression was implemented to define the transcriptomics profile of these cells and revealed the presence of endothelial, inflammatory, and stromal cells. Endothelial cell reclustering identified subclusters characterized by noncanonical transcriptomics profile and active angiogenesis. Deeper investigation of the inflammatory cells showed a subcluster of macrophages expressing proangiogenic cytokines, presumably contributing to angiogenesis. The stromal cell cluster included a pericyte-myofibroblast transdifferentiating subcluster, indicating the involvement of pericytes in fibrogenesis. Differentially expressed gene analysis showed that Adipocyte Enhancer-binding Protein 1, AEBP1, was significantly upregulated in myofibroblast clusters, suggesting that this molecule may have a role in transformation. Cell culture experiments with human retinal pericytes (HRP) in high-glucose condition confirmed the molecular transformation of pericytes toward myofibroblastic lineage. AEBP1 siRNA transfection in HRP reduced the expression of profibrotic markers in high glucose. In conclusion, AEBP1 signaling modulates pericyte-myofibroblast transformation, suggesting that targeting AEBP1 could prevent scar tissue formation in advanced DR.

Authors

Katia Corano Scheri, Jeremy A. Lavine, Thomas Tedeschi, Benjamin R. Thomson, Amani A. Fawzi

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Figure 2

Endothelial cell clustering, classification, and pathway enrichment analysis.

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Endothelial cell clustering, classification, and pathway enrichment anal...
(A and B) Representative UMAP plot of the 4 different cluster of endothelial cells is shown in A, while UMAP plot for each sample is shown in B. (C) Dot plot for the most common enriched genes for immature, stalk, tip, and mature endothelial cells. Cell type classification and the percentage and average expression of the specific cell markers are shown. (D) Dot plot of the pathway enrichment analysis for the upregulated genes of each cluster using gProfiler and PathFindR package. Only the most significant differentially expressed genes (log2FC > 1 and Padj < 0.01) were chosen for pathway enrichment analysis. The graph shows the number of genes modulated in each single pathway, the fold enrichment, and the statistical significance. (E) Dot plot showing the metabolic pathway gene expression. (F) Dot plot showing a panel of proliferation-related genes.

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