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Single-cell profiling reveals inflammatory polarization of human carotid versus femoral plaque leukocytes
Joshua Slysz, Arjun Sinha, Matthew DeBerge, Shalini Singh, Harris Avgousti, Inhyeok Lee, Kristofor Glinton, Reina Nagasaka, Prarthana Dalal, Shaina Alexandria, Ching Man Wai, Ricardo Tellez, Mariavittoria Vescovo, Ashwin Sunderraj, Xinkun Wang, Matthew Schipma, Ryan Sisk, Rishab Gulati, Jenifer Vallejo, Ryosuke Saigusa, Donald M. Lloyd-Jones, Jon Lomasney, Samuel Weinberg, Karen Ho, Klaus Ley, Chiara Giannarelli, Edward B. Thorp, Matthew J. Feinstein
Joshua Slysz, Arjun Sinha, Matthew DeBerge, Shalini Singh, Harris Avgousti, Inhyeok Lee, Kristofor Glinton, Reina Nagasaka, Prarthana Dalal, Shaina Alexandria, Ching Man Wai, Ricardo Tellez, Mariavittoria Vescovo, Ashwin Sunderraj, Xinkun Wang, Matthew Schipma, Ryan Sisk, Rishab Gulati, Jenifer Vallejo, Ryosuke Saigusa, Donald M. Lloyd-Jones, Jon Lomasney, Samuel Weinberg, Karen Ho, Klaus Ley, Chiara Giannarelli, Edward B. Thorp, Matthew J. Feinstein
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Resource and Technical Advance Cardiology Inflammation

Single-cell profiling reveals inflammatory polarization of human carotid versus femoral plaque leukocytes

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Abstract

Femoral atherosclerotic plaques are less inflammatory than carotid plaques histologically, but limited cell-level data exist regarding comparative immune landscapes and polarization at these sites. We investigated intraplaque leukocyte phenotypes and transcriptional polarization in 49 patients undergoing femoral (n = 23) or carotid (n = 26) endarterectomy using single-cell RNA-Seq (scRNA-Seq; n = 13), flow cytometry (n = 24), and IHC (n = 12). Comparative scRNA-Seq of CD45+-selected leukocytes from femoral (n = 9; 35,265 cells) and carotid (n = 4; 30,655 cells) plaque revealed distinct transcriptional profiles. Inflammatory foam cell–like macrophages and monocytes comprised higher proportions of myeloid cells in carotid plaques, whereas noninflammatory foam cell–like macrophages and LYVE1-overexpressing macrophages comprised higher proportions of myeloid cells in femoral plaque (P < 0.001 for all). A significant comparative excess of CCR2+ macrophages in carotid versus plaque was observed by flow cytometry in a separate validation cohort. B cells were more prevalent and exhibited a comparatively antiinflammatory profile in femoral plaque, whereas cytotoxic CD8+ T cells were more prevalent in carotid plaque. In conclusion, human femoral plaques exhibit distinct macrophage phenotypic and transcriptional profiles as well as diminished CD8+ T cell populations compared with human carotid plaques

Authors

Joshua Slysz, Arjun Sinha, Matthew DeBerge, Shalini Singh, Harris Avgousti, Inhyeok Lee, Kristofor Glinton, Reina Nagasaka, Prarthana Dalal, Shaina Alexandria, Ching Man Wai, Ricardo Tellez, Mariavittoria Vescovo, Ashwin Sunderraj, Xinkun Wang, Matthew Schipma, Ryan Sisk, Rishab Gulati, Jenifer Vallejo, Ryosuke Saigusa, Donald M. Lloyd-Jones, Jon Lomasney, Samuel Weinberg, Karen Ho, Klaus Ley, Chiara Giannarelli, Edward B. Thorp, Matthew J. Feinstein

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Figure 4

Distinct macrophage gene expression and phenotypic profiles confirmed by scRNA-Seq (8,941 carotid myeloid cells, 4,461 femoral myeloid cells) and in a validation cohort by flow cytometry.

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Distinct macrophage gene expression and phenotypic profiles confirmed by...
(A) Cell clusters as a proportion of myeloid cells were compared for carotid versus femoral samples and are displayed in UMAP visualization of separated carotid and femoral samples. (B) Stacked bar graph and corresponding table of the logistic regression comparing cell proportions in carotid versus femoral plaque (log OR, 95% CI expressed; *P < 0.0017, between carotid and femoral plaques that were significant at Bonferroni-corrected value. (C) Volcano plot of highly expressed genes for carotid versus femoral plaque overall. (D–F) Flow cytometry of digested plaque macrophages, identified as CD11b+CD14+CD64+HLA-DRhi live cells and further distinguished based on CCR2 expression, revealed a significantly higher proportion of carotid plaque macrophages expressing CCR2 than carotid plaque macrophages (representative plot in E, comparison in F, left plot). Classical (CD14++CD16–) monocytes from blood also expressed CCR2 more highly in patients undergoing carotid versus femoral endarterectomy (F, right plot).

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