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Inhibition of Bruton’s tyrosine kinase with PD-1 blockade modulates T cell activation in solid tumors
Emily Schwarz, … , Bradley W. Blaser, William E. Carson III
Emily Schwarz, … , Bradley W. Blaser, William E. Carson III
Published November 8, 2024
Citation Information: JCI Insight. 2024;9(21):e169927. https://doi.org/10.1172/jci.insight.169927.
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Clinical Research and Public Health Clinical trials Immunology

Inhibition of Bruton’s tyrosine kinase with PD-1 blockade modulates T cell activation in solid tumors

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Abstract

BACKGROUND Inhibition of Bruton’s tyrosine kinase with ibrutinib blocks the function of myeloid-derived suppressor cells (MDSC). The combination of ibrutinib and nivolumab was tested in patients with metastatic solid tumors.METHODS Sixteen patients received ibrutinib 420 mg p.o. daily with nivolumab 240 mg i.v. on days 1 and 15 of a 28-day cycle. The effect of ibrutinib and nivolumab on MDSC, the immune profile, and cytokine levels were measured. Single-cell RNA-Seq and T cell receptor sequencing of immune cells was performed.RESULTS Common adverse events were fatigue and anorexia. Four patients had partial responses and 4 had stable disease at 3 months (average 6.5 months, range 3.5–14.6). Median overall survival (OS) was 10.8 months. Seven days of Bruton’s tyrosine kinase (BTK) inhibition significantly increased the proportion of monocytic-MDSC (M-MDSC) and significantly decreased chemokines associated with MDSC recruitment and accumulation (CCL2, CCL3, CCL4, CCL13). Single-cell RNA-Seq revealed ibrutinib-induced downregulation of genes associated with MDSC-suppressive function (TIMP1, CXCL8, VEGFA, HIF1A), reduced MDSC interactions with exhausted CD8+ T cells, and decreased TCR repertoire diversity. The addition of nivolumab significantly increased circulating NK and CD8+ T cells and increased CD8+ T cell proliferation. Exploratory analyses suggest that MDSC and T cell gene expression and TCR repertoire diversity were differentially affected by BTK inhibition according to patient response.CONCLUSION Ibrutinib and nivolumab were well tolerated and affected MDSC and T cell function in patients with solid metastatic tumors.TRIAL REGISTRATION ClinicalTrials.gov NCT03525925.FUNDING NIH; National Cancer Institute Cancer; National Center for Advancing Translational Sciences; Pelotonia.

Authors

Emily Schwarz, Brooke Benner, Robert Wesolowski, Dionisia Quiroga, Logan Good, Steven H. Sun, Himanshu Savardekar, Jianying Li, Kyeong Joo Jung, Megan C. Duggan, Gabriella Lapurga, Jami Shaffer, Luke Scarberry, Bhavana Konda, Claire Verschraegen, Kari Kendra, Manisha Shah, Robert Rupert, Paul Monk, Hiral A. Shah, Anne M. Noonan, Kristin Bixel, John Hays, Lai Wei, Xueliang Pan, Gregory Behbehani, Yang Hu, Olivier Elemento, Dongjun Chung, Gang Xin, Bradley W. Blaser, William E. Carson III

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Figure 5

Single-cell RNA-Seq of patient immune cells after ibrutinib treatment and MDSC-specific gene changes.

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Single-cell RNA-Seq of patient immune cells after ibrutinib treatment an...
Peripheral blood mononuclear cell (PBMC) samples (2 paired samples from 14 patients plus individual samples from 2 patients, n = 30) at baseline (C1D–7) and following single-agent ibrutinib treatment (C1D1) were analyzed by scRNA-Seq. PBMC samples were aggregated and clustered into immune populations based on gene expression and visualized using UMAP. (A) UMAP showing clusters from all patients combined at C1D–7 (left) and C1D1 (right). (B) The ratio of each cell type present at each time point. (C) Combined UMAP from patients with clinical benefit (CB) (partial response or stable disease) who had 2 paired samples (n = 6) at C1D–7 (left) and C1D1 (right). (D) The ratio of each cell type present at each time point. (E) Combined UMAP plot from patients with 2 paired samples who had disease progression (PD, n = 8) at C1D–7 (left) and C1D1 (right). (F) The ratio of each cell type present at each time point. (G) Volcano plot of top differentially expressed genes in MDSC from all patients after ibrutinib treatment. Genes downregulated in MDSC at C1D1 relative to C1D–7 are represented in blue, and genes upregulated in MDSC at C1D1 relative to C1D–7 are represented in red. (H) Volcano plot of top differentially expressed genes in C1D1 MDSC from patients with CB versus patients with PD. Genes downregulated in MDSC from patients with CB relative to MDSC from patients with PD at C1D1 are represented in blue, and genes upregulated in MDSC from patients with CB relative to PD are represented in red (x axis = log2 fold change/y axis = –log10[adjusted P value]). cDC, conventional dendritic cell; pDC, plasmacytoid DC; HSPC, hematopoietic stem cells.

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