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LSD1 promotes prostate cancer reprogramming by repressing TP53 signaling independently of its demethylase function
Anbarasu Kumaraswamy, Zhi Duan, Diana Flores, Chao Zhang, Archana Sehrawat, Ya-Mei Hu, Olivia A. Swaim, Eva Rodansky, William K. Storck, Joshua A. Kuleape, Karan Bedi, Rahul Mannan, Xiao-Ming Wang, Aaron Udager, Visweswaran Ravikumar, Armand Bankhead III, Ilsa Coleman, John K. Lee, Colm Morrissey, Peter S. Nelson, Arul M. Chinnaiyan, Arvind Rao, Zheng Xia, Joel A. Yates, Joshi J. Alumkal
Anbarasu Kumaraswamy, Zhi Duan, Diana Flores, Chao Zhang, Archana Sehrawat, Ya-Mei Hu, Olivia A. Swaim, Eva Rodansky, William K. Storck, Joshua A. Kuleape, Karan Bedi, Rahul Mannan, Xiao-Ming Wang, Aaron Udager, Visweswaran Ravikumar, Armand Bankhead III, Ilsa Coleman, John K. Lee, Colm Morrissey, Peter S. Nelson, Arul M. Chinnaiyan, Arvind Rao, Zheng Xia, Joel A. Yates, Joshi J. Alumkal
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Research Article Oncology

LSD1 promotes prostate cancer reprogramming by repressing TP53 signaling independently of its demethylase function

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Abstract

Lysine-specific demethylase 1 (LSD1) is a histone demethylase that promotes stemness and cell survival in cancers such as prostate cancer. Most prostate malignancies are adenocarcinomas with luminal differentiation. However, some tumors undergo cellular reprogramming to a more lethal subset termed neuroendocrine prostate cancer (NEPC) with neuronal differentiation. The frequency of NEPC is increasing since the widespread use of potent androgen receptor signaling inhibitors. Currently, there are no effective treatments for NEPC. We previously determined that LSD1 promotes survival of prostate adenocarcinoma tumors. However, the role of LSD1 in NEPC is unknown. Here, we determined that LSD1 is highly upregulated in NEPC versus adenocarcinoma patient tumors. LSD1 suppression with RNAi or allosteric LSD1 inhibitors — but not catalytic inhibitors — reduced NEPC cell survival. RNA-Seq analysis revealed that LSD1 represses pathways linked to luminal differentiation, and TP53 was the top reactivated pathway. We confirmed that LSD1 suppressed the TP53 pathway by reducing TP53 occupancy at target genes while LSD1’s catalytic function was dispensable for this effect. Mechanistically, LSD1 inhibition disrupted LSD1-HDAC interactions, increasing histone acetylation at TP53 targets. Finally, LSD1 inhibition suppressed NEPC tumor growth in vivo. These findings suggest that blocking LSD1’s noncatalytic function may be a promising treatment strategy for NEPC.

Authors

Anbarasu Kumaraswamy, Zhi Duan, Diana Flores, Chao Zhang, Archana Sehrawat, Ya-Mei Hu, Olivia A. Swaim, Eva Rodansky, William K. Storck, Joshua A. Kuleape, Karan Bedi, Rahul Mannan, Xiao-Ming Wang, Aaron Udager, Visweswaran Ravikumar, Armand Bankhead III, Ilsa Coleman, John K. Lee, Colm Morrissey, Peter S. Nelson, Arul M. Chinnaiyan, Arvind Rao, Zheng Xia, Joel A. Yates, Joshi J. Alumkal

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Figure 4

TP53 activation is important for LSD1 inhibition–mediated growth arrest.

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TP53 activation is important for LSD1 inhibition–mediated growth arrest....
(A) LNCaP cells with WT TP53 or LNCaP cells lacking TP53 expression (LNCaP TP53KO) were treated with SP2509. IC50 values were calculated (left), n = 3. TP53 status of the WT and KO cells were confirmed by measuring TP53 protein levels by Western blotting (right). (B and C) LNCaP or LNCaP TP53KO cells were treated with 400 nM SP2509 for 48 hours. Expression levels of TP53 target genes (B) were measured by qPCR, n = 3. Cell cycle profile (C) was analyzed by flow cytometry. The percentage of cells in G2/M phase of the cell cycle is shown, n = 3. (D) Effect of the LSD1 inhibitor SP2509 was tested in mouse prostate cancer cell lines with intact Trp53 (DKO) or Trp53 KO (TKO). IC50 values were calculated and plotted as bar plot (left), n = 3. Trp53 status of the WT and KO cells were confirmed by measuring Trp53 protein levels by Western blotting (right). (E and F) DKO or TKO cells were treated with 150 nM SP2509 for 48 hours. Expression levels of Trp53 target genes were measured by qPCR, n = 3 (E). Cell cycle profile was analyzed by flow cytometry. The percentage of cells in G2/M phase of the cell cycle is shown, n = 3 (F). (G) NCI-H660 were treated with 400 nM SP2509 alone, 2 μM APR-246, or the combination for 72 hours. Cell viability was determined by CTG assay (top), n = 4. TP53 activity score from single agent or combination treatment was measured by VIPER analysis of RNA-Seq data from NCI-H660 cells upon indicated treatments (bottom). For A–G, data are reported as the mean ± SD. For statistical analysis, unpaired 2-tailed Welch’s t tests were performed, and P values are indicated.

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