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Single-epitope T cell–based vaccine protects against SARS-CoV-2 infection in a preclinical animal model
Takuya Tada, Ju-Yi Peng, Belinda M. Dcosta, Nathaniel R. Landau
Takuya Tada, Ju-Yi Peng, Belinda M. Dcosta, Nathaniel R. Landau
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Research Article COVID-19 Immunology

Single-epitope T cell–based vaccine protects against SARS-CoV-2 infection in a preclinical animal model

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Abstract

Currently authorized COVID-19 vaccines induce humoral and cellular responses to epitopes in the SARS-CoV-2 spike protein, though the relative roles of antibodies and T cells in protection are not well understood. To understand the role of vaccine-elicited T cell responses in protection, we established a T cell–only vaccine using a DC-targeted lentiviral vector expressing single CD8+ T cell epitopes of the viral nucleocapsid, spike, and ORF1. Immunization of angiotensin-converting enzyme 2–transgenic mice with ex vivo lentiviral vector–transduced DCs or by direct injection of the vector induced the proliferation of functional antigen-specific CD8+ T cells, resulting in a 3-log decrease in virus load upon live virus challenge that was effective against the ancestral virus and Omicron variants. The Pfizer/BNT162b2 vaccine was also protective in mice, but the antibodies elicited did not cross-react on the Omicron variants, suggesting that the protection was mediated by T cells. The studies suggest that the T cell response plays an important role in vaccine protection. The findings suggest that the incorporation of additional T cell epitopes into current vaccines would increase their effectiveness and broaden protection.

Authors

Takuya Tada, Ju-Yi Peng, Belinda M. Dcosta, Nathaniel R. Landau

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Figure 6

Comparison of protective efficacy of BNT162b2, lentivirus-based DC, and direct lentivirus vaccine against SARS-CoV-2 variants.

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Comparison of protective efficacy of BNT162b2, lentivirus-based DC, and ...
(A) The experimental scheme is diagrammed. hACE2-KI mice were immunized with mRNA vaccine BNT162b2 (5 μg), with N219-227 or S539-546 vector–transduced DCs (1 × 106), or by direct lentivirus injection of the CD40L-N219-227 or CD40L-S539-546 lentiviral vectors (n = 5). Uninfected and unimmunized/infected mice served as controls. All mice were boosted 7 days after the first immunization. After another 7 days, the mice were challenged by infection with SARS-CoV-2 WA1/2020 or Omicron variants. (B) Antigen-specific CD8+ T cells of the immunized and challenged mice were stained with the corresponding N219-227 and S539-546 tetramers and analyzed by flow cytometry. (C) The tetramer+IFN-γ+CD8+ T cells of the immunized mice were quantified by flow cytometry. (D) Sera from the immunized mice was collected 7 days postboost. Neutralizing antibody titers against viruses with D614, BA.1, BA.2, and BA.5 S were measured. The IC50 of the serum from each mouse is shown. (E) Immunized mice were challenged with SARS-CoV-2 WA1/2020 or BA.1, BA.2, BA.5. At 3 dpi (SARS-CoV-2 WA1/2020) or 2 dpi (BA.1, BA.2, and BA.5), virus load in the lungs was determined. Statistical significance was determined by Kruskal-Wallis test with post hoc Dunn’s test with confidence intervals shown as the mean ± SD. (*P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001.) The experiment was done twice with similar results.

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