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Regulation of lung progenitor plasticity and repair by fatty acid oxidation
Quetzalli D. Angeles-Lopez, Jhonny Rodriguez-Lopez, Paula Agudelo Garcia, Jazmin Calyeca, Diana Álvarez, Marta Bueno, Lan N. Tu, Myriam Salazar-Terreros, Natalia Vanegas-Avendaño, Jordan E. Krull, Aigul Moldobaeva, Srimathi Bogamuwa, Stephanie S. Scott, Victor Peters, Brenda F. Reader, Sruti Shiva, Michael Jurczak, Mahboobe Ghaedi, Qin Ma, Toren Finkel, Mauricio Rojas, Ana L. Mora
Quetzalli D. Angeles-Lopez, Jhonny Rodriguez-Lopez, Paula Agudelo Garcia, Jazmin Calyeca, Diana Álvarez, Marta Bueno, Lan N. Tu, Myriam Salazar-Terreros, Natalia Vanegas-Avendaño, Jordan E. Krull, Aigul Moldobaeva, Srimathi Bogamuwa, Stephanie S. Scott, Victor Peters, Brenda F. Reader, Sruti Shiva, Michael Jurczak, Mahboobe Ghaedi, Qin Ma, Toren Finkel, Mauricio Rojas, Ana L. Mora
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Research Article Metabolism Pulmonology

Regulation of lung progenitor plasticity and repair by fatty acid oxidation

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Abstract

Idiopathic pulmonary fibrosis (IPF) is an age-related interstitial lung disease, characterized by inadequate alveolar regeneration and ectopic bronchiolization. While some molecular pathways regulating lung progenitor cells have been described, the role of metabolic pathways in alveolar regeneration is poorly understood. We report that expression of fatty acid oxidation (FAO) genes is significantly diminished in alveolar epithelial cells of IPF lungs by single-cell RNA sequencing and tissue staining. Genetic and pharmacological inhibition in AT2 cells of carnitine palmitoyltransferase 1a (CPT1a), the rate-limiting enzyme of FAO, promoted mitochondrial dysfunction and acquisition of aberrant intermediate states expressing basaloid, and airway secretory cell markers SCGB1A1 and SCGB3A2. Furthermore, mice with deficiency of CPT1a in AT2 cells show enhanced susceptibility to developing lung fibrosis with an accumulation of epithelial cells expressing markers of intermediate cells, airway secretory cells, and senescence. We found that deficiency of CPT1a causes a decrease in SMAD7 protein levels and TGF-β signaling pathway activation. These findings suggest that the mitochondrial FAO metabolic pathway contributes to the regulation of lung progenitor cell repair responses and deficiency of FAO contributes to aberrant lung repair and the development of lung fibrosis.

Authors

Quetzalli D. Angeles-Lopez, Jhonny Rodriguez-Lopez, Paula Agudelo Garcia, Jazmin Calyeca, Diana Álvarez, Marta Bueno, Lan N. Tu, Myriam Salazar-Terreros, Natalia Vanegas-Avendaño, Jordan E. Krull, Aigul Moldobaeva, Srimathi Bogamuwa, Stephanie S. Scott, Victor Peters, Brenda F. Reader, Sruti Shiva, Michael Jurczak, Mahboobe Ghaedi, Qin Ma, Toren Finkel, Mauricio Rojas, Ana L. Mora

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Figure 1

FAO gene expression decreases with age and IPF disease in lung epithelial cells.

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FAO gene expression decreases with age and IPF disease in lung epithelia...
(A) Fatty acid oxidation (FAO) pathway. (B) Up- (red) and downregulated (blue) pathways between healthy donor (n = 9) and IPF (n = 6) AT2 cells (adjusted P < 0.05). (C) FAO score of all the epithelial and airway subtypes from healthy old deceased donor (n = 9) and IPF lungs (n = 6). Violin plots display the distribution of data, and statistical significance was determined by Wilcoxon’s test. (D) Visualization and quantification of lung transcriptomic information obtained through Xenium-based spatial transcriptomics analysis. In the image, colors correspond to the legend. Each dot represents a sequencing spot. Scale bar: 50 μm. Left graph shows the decrease in SFTPC+ cells in IPF lung tissue and right graph shows the decrease in transcripts related to the FAO pathway in SFTPC+ cells in healthy old donors (n = 2) and IPF (n = 2). Data represent mean ± SD; each dot represents a field of view (FOV) from 2 tissues per condition. Statistical significance was determined by 2-tailed Student’s t test (left graph) and individual unpaired t test (right graph). (E) Immunofluorescent staining showing CPT1a expression (red) in AT2 cells (green) in human lungs from young and old deceased donor or IPF lungs (n = 3, per group) and quantification of number of HT2-280+ and CPT1a+ cells. Scale bars: 50 μm. Data represent mean ± SD; each dot represents a FOV. Statistical significance was determined by 1-way ANOVA followed by Tukey’s multiple-comparison test.

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