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ARID1A-deficient bladder cancer is dependent on PI3K signaling and sensitive to EZH2 and PI3K inhibitors
Hasibur Rehman, … , Sooryanarayana Varambally, James E. Ferguson III
Hasibur Rehman, … , Sooryanarayana Varambally, James E. Ferguson III
Published July 19, 2022
Citation Information: JCI Insight. 2022;7(16):e155899. https://doi.org/10.1172/jci.insight.155899.
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Research Article Oncology

ARID1A-deficient bladder cancer is dependent on PI3K signaling and sensitive to EZH2 and PI3K inhibitors

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Abstract

Metastatic urothelial carcinoma is generally incurable with current systemic therapies. Chromatin modifiers are frequently mutated in bladder cancer, with ARID1A-inactivating mutations present in about 20% of tumors. EZH2, a histone methyltransferase, acts as an oncogene that functionally opposes ARID1A. In addition, PI3K signaling is activated in more than 20% of bladder cancers. Using a combination of in vitro and in vivo data, including patient-derived xenografts, we show that ARID1A-mutant tumors were more sensitive to EZH2 inhibition than ARID1A WT tumors. Mechanistic studies revealed that (a) ARID1A deficiency results in a dependency on PI3K/AKT/mTOR signaling via upregulation of a noncanonical PI3K regulatory subunit, PIK3R3, and downregulation of MAPK signaling and (b) EZH2 inhibitor sensitivity is due to upregulation of PIK3IP1, a protein inhibitor of PI3K signaling. We show that PIK3IP1 inhibited PI3K signaling by inducing proteasomal degradation of PIK3R3. Furthermore, ARID1A-deficient bladder cancer was sensitive to combination therapies with EZH2 and PI3K inhibitors in a synergistic manner. Thus, our studies suggest that bladder cancers with ARID1A mutations can be treated with inhibitors of EZH2 and/or PI3K and revealed mechanistic insights into the role of noncanonical PI3K constituents in bladder cancer biology.

Authors

Hasibur Rehman, Darshan S. Chandrashekar, Chakravarthi Balabhadrapatruni, Saroj Nepal, Sai Akshaya Hodigere Balasubramanya, Abigail K. Shelton, Kasey R. Skinner, Ai-Hong Ma, Ting Rao, Sumit Agarwal, Marie-Lisa Eich, Alyncia D. Robinson, Gurudatta Naik, Upender Manne, George J. Netto, C. Ryan Miller, Chong-xian Pan, Guru Sonpavde, Sooryanarayana Varambally, James E. Ferguson III

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Figure 5

PIK3IP1 is necessary and sufficient for decreased viability of ARID1Akd cells and functions by inducing proteasomal degradation of PIK3R3.

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PIK3IP1 is necessary and sufficient for decreased viability of ARID1Akd ...
(A) Immunoblot analysis of PI3K constituents in ARID1Akd/PIK3IP1kd cells versus ARID1Akd/empty vector cells, showing that PIK3IP1 upregulation upon GSK-126 treatment (5 μM for 48 hours) is necessary to downregulate PIK3R3 and AKT activation. (B) Cell viability dose-response analysis with GSK-126 6-day treatment of ARID1Akd/PIK3IP1kd cells or empty vector (EV) controls, showing that PIK3IP1kd is sufficient to rescue the GSK-126 sensitivity phenotype in ARID1Akd cells. t test using IC50 values was performed. (C) Immunoblot analysis of ARID1Akd cell lines stably transfected with doxycycline-inducible PIK3IP1 (iPIK3IP1), showing that PIK3IP1 overexpression results in downregulation of PIK3R3 and AKT activation. rtTA denotes vector-encoding doxycycline-inducible transcriptional modulators (without inducible PIK3IP1). (D) Cell proliferation time course using the ARID1Akd cell lines in C, showing that PIK3IP1 overexpression results in less proliferation. t tests were performed. (E) Cotreatment of ARID1Akd/PIK3IP1 doxycycline-inducible cells with doxycycline and the proteasome inhibitor MG132 (15 μM for 12 hours) prevented PIK3R3 downregulation upon PIK3IP1 overexpression. (F) Cotreatment of ARID1Akd/iPIK3IP1 cells with doxycycline and MG-132, followed by immunoprecipitation of PIK3R3 resulted in coimmunoprecipitation of PIK3IP1 and poly-ubiquitination signal.

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