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NK and CD8+ T cell phenotypes predict onset and control of CMV viremia after kidney transplant
Harry Pickering, Subha Sen, Janice Arakawa-Hoyt, Kenichi Ishiyama, Yumeng Sun, Rajesh Parmar, Richard S. Ahn, Gemalene Sunga, Megan Llamas, Alexander Hoffmann, Mario Deng, Suphamai Bunnapradist, Joanna M. Schaenman, David W. Gjertson, Maura Rossetti, Lewis L. Lanier, Elaine F. Reed, CMV Systems Immunobiology Group
Harry Pickering, Subha Sen, Janice Arakawa-Hoyt, Kenichi Ishiyama, Yumeng Sun, Rajesh Parmar, Richard S. Ahn, Gemalene Sunga, Megan Llamas, Alexander Hoffmann, Mario Deng, Suphamai Bunnapradist, Joanna M. Schaenman, David W. Gjertson, Maura Rossetti, Lewis L. Lanier, Elaine F. Reed, CMV Systems Immunobiology Group
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Research Article Immunology Transplantation

NK and CD8+ T cell phenotypes predict onset and control of CMV viremia after kidney transplant

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Abstract

CMV causes mostly asymptomatic but lifelong infection. Primary infection or reactivation in immunocompromised individuals can be life-threatening. CMV viremia often occurs in solid organ transplant recipients and associates with decreased graft survival and higher mortality. Furthering understanding of impaired immunity that allows CMV reactivation is critical to guiding antiviral therapy and examining the effect of CMV on solid organ transplant outcomes. This study characterized longitudinal immune responses to CMV in 31 kidney transplant recipients with CMV viremia and matched, nonviremic recipients. Recipients were sampled 3 and 12 months after transplant, with additional samples 1 week and 1 month after viremia. PBMCs were stained for NK and T cell markers. PBMC transcriptomes were characterized by RNA-Seq. Plasma proteins were quantified by Luminex. CD8+ T cell transcriptomes were characterized by single-cell RNA-Seq. Before viremia, patients had high levels of IL-15 with concurrent expansion of immature CD56bright NK cells. After viremia, mature CD56dim NK cells and CD28–CD8+ T cells upregulating inhibitory and NK-associated receptors were expanded. Memory NK cells and NK-like CD28–CD8+ T cells were associated with control of viremia. These findings suggest that signatures of innate activation may be prognostic for CMV reactivation after transplant, while CD8+ T cell functionality is critical for effective control of CMV.

Authors

Harry Pickering, Subha Sen, Janice Arakawa-Hoyt, Kenichi Ishiyama, Yumeng Sun, Rajesh Parmar, Richard S. Ahn, Gemalene Sunga, Megan Llamas, Alexander Hoffmann, Mario Deng, Suphamai Bunnapradist, Joanna M. Schaenman, David W. Gjertson, Maura Rossetti, Lewis L. Lanier, Elaine F. Reed, CMV Systems Immunobiology Group

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Figure 5

Partial least squares regression defines CMV PCR+ patients before and long-term after viremia and highlights acute and longitudinal immunological changes after detection of CMV viremia.

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Partial least squares regression defines CMV PCR+ patients before and lo...
Partial least squares (PLS) regression of NK and T cell phenotypes, plasma analytes, and whole-blood transcriptome modules was used to identify (A) variables important in differentiating CMV PCR– and PCR+ patients longitudinally after transplant and (B) those important in defining immunological phenotypes prior to and longitudinally after detection of CMV viremia. Top 10 most informative variables per component are indicated by arrows and linked text. CMV PCR– 3 months (dark blue, n = 17) and 12 months after transplant (light blue, n = 24), and PCR+ 3 months after transplant, before viremia, (purple, n = 14), 1 week after detection of viremia (1WK PV, red, n = 19), 1 month after detection of viremia (1M PV, orange, n = 9), and 12 months after transplant after viremia (yellow, n = 22) samples are indicated; ellipses capture 50% of the variance per group. Bold arrow highlights longitudinal progression immune profiles of CMV PCR+ patients. CD56b_maturation, CD56d_memory, CD28p_transitional, CD28n_inhibitory, and CD28n_NK-like were determined from protein surface expression profiles on NK and CD8+ T cells, as detailed in Figures 2 and 3.

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