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Developing SHP2-based combination therapy for KRAS-amplified cancer
Tianxia Li, Osamu Kikuchi, Jin Zhou, Yichen Wang, Babita Pokharel, Klavdija Bastl, Prafulla Gokhale, Aine Knott, Yanxi Zhang, John G. Doench, Zandra V. Ho, Daniel V.T. Catenacci, Adam J. Bass
Tianxia Li, Osamu Kikuchi, Jin Zhou, Yichen Wang, Babita Pokharel, Klavdija Bastl, Prafulla Gokhale, Aine Knott, Yanxi Zhang, John G. Doench, Zandra V. Ho, Daniel V.T. Catenacci, Adam J. Bass
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Research Article Oncology

Developing SHP2-based combination therapy for KRAS-amplified cancer

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Abstract

Gastroesophageal adenocarcinomas (GEAs) harbor recurrent amplification of KRAS, leading to marked overexpression of WT KRAS protein. We previously demonstrated that SHP2 phosphatase, which acts to promote KRAS and downstream MAPK pathway activation, is a target in these tumors when combined with MEK inhibition. We hypothesized that SHP2 inhibitors may serve as a foundation for developing novel combination inhibitor strategies for therapy of KRAS-amplified GEA, including with targets outside the MAPK pathway. Here, we explore potential targets to effectively augment the efficacy of SHP2 inhibition, starting with genome-wide CRISPR screens in KRAS-amplified GEA cell lines with and without SHP2 inhibition. We identify candidate targets within the MAPK pathway and among upstream RTKs that may enhance SHP2 efficacy in KRAS-amplified GEA. Additional in vitro and in vivo experiments demonstrated the potent cytotoxicity of pan-ERBB kinase inhibitions in vitro and in vivo. Furthermore, beyond targets within the MAPK pathway, we demonstrate that inhibition of CDK4/6 combines potently with SHP2 inhibition in KRAS-amplified GEA, with greater efficacy of this combination in KRAS-amplified, compared with KRAS-mutant, tumors. These results suggest therapeutic combinations for clinical study in KRAS-amplified GEAs.

Authors

Tianxia Li, Osamu Kikuchi, Jin Zhou, Yichen Wang, Babita Pokharel, Klavdija Bastl, Prafulla Gokhale, Aine Knott, Yanxi Zhang, John G. Doench, Zandra V. Ho, Daniel V.T. Catenacci, Adam J. Bass

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Figure 4

SHP2 inhibition sensitizes KRAS-amp GC cells to an SRC inhibitor.

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SHP2 inhibition sensitizes KRAS-amp GC cells to an SRC inhibitor.
(A) Re...
(A) Representative immunoblots of p-ERK in KE-39 cells after 24-hour treatment with bosutinib at indicated doses with or without 5 μM SHP099. DMSO was used as a vehicle control; actin was used as a loading control. (B) Cell viability (n = 3 independent experiments) in GC lines (KE-39, CAT12, and GSU) after 72-hour treatment with bosutinib (Bosu) at indicated doses with or without 5 μM SHP099 (SHP). Cell viabilities were normalized to the DMSO control group and are expressed as a percentage of maximum proliferation. One-way ANOVA (P < 0.0001 for KE-39, P < 0.0001 for CAT12, and P < 0.0001 for GSU), with post hoc Tukey test. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001. (C) Clonogenic assay of 3 KRAS-amp GC lines (KE-39, CAT12, and YCC1) and 1 KRAS-mut GC line (GSU) treated with bosutinib at indicated doses with or without 2.5 μM SHP099 after 10 days. Images are representative of 3 independent experiments.

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