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Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
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Research Article Metabolism

Lipin 1 modulates mRNA splicing during fasting adaptation in liver

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Abstract

Lipin 1 regulates cellular lipid homeostasis through roles in glycerolipid synthesis (through phosphatidic acid phosphatase activity) and transcriptional coactivation. Lipin 1–deficient individuals exhibit episodic disease symptoms that are triggered by metabolic stress, such as stress caused by prolonged fasting. We sought to identify critical lipin 1 activities during fasting. We determined that lipin 1 deficiency induces widespread alternative mRNA splicing in liver during fasting, much of which is normalized by refeeding. The role of lipin 1 in mRNA splicing was largely independent of its enzymatic function. We identified interactions between lipin 1 and spliceosome proteins, as well as a requirement for lipin 1 to maintain homeostatic levels of spliceosome small nuclear RNAs and specific RNA splicing factors. In fasted Lpin1–/– liver, we identified a correspondence between alternative splicing of phospholipid biosynthetic enzymes and dysregulated phospholipid levels; splicing patterns and phospholipid levels were partly normalized by feeding. Thus, lipin 1 influences hepatic lipid metabolism through mRNA splicing, as well as through enzymatic and transcriptional activities, and fasting exacerbates the deleterious effects of lipin 1 deficiency on metabolic homeostasis.

Authors

Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue

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Figure 4

Lipin 1 interacts with mRNA processing proteins.

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Lipin 1 interacts with mRNA processing proteins.
(A) Network of lipin 1 ...
(A) Network of lipin 1 interactions with mRNA processing factors (enrichment score = adjusted P < 1 × 10–3). Network drawn in STRING (string-db.org). (B) Lipin 1 associates with many proteins that are part of the U2 snRNP complex (indicated by red stars). (C) Validation of lipin 1 protein interactions by streptavidin pulldown followed by immunoblot. These include known lipin 1–interacting proteins (lipin 2 and lipin 3), as well as several components of the U2 snRNP. The negative control reaction was performed to demonstrate no pull-down in the presence of endogenously biotinylated proteins. Antibody information provided in Supplemental Table 8. (D) Coimmunoprecipitation of endogenous lipin 1 with endogenous spliceosome proteins SF3B6 and SPF45. Immunoprecipitation was performed from hepatic nuclear extracts with antibodies against spliceosome proteins and detected on blots with lipin 1 antibody. FT, flow-through; IP, immunoprecipitate; IB, immunoblot detection. (E) Protein levels of representative U2 and U1 spliceosome proteins in fasted hepatic nuclear extracts assessed by Western blot. (F) Expression levels of snRNAs U1, U2, U4, U5, and U6 in fasted and refed Lpin1+/+ or Lpin1–/– liver. snRNA expression was normalized to 18S ribosomal RNA (n = 4). Values shown are mean ± SD; *P < 0.05 via 1-way ANOVA followed by t test. **P < 0.01; ****P < 0.0001.

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