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IgV somatic mutation of human anti–SARS-CoV-2 monoclonal antibodies governs neutralization and breadth of reactivity
Mayara Garcia de Mattos Barbosa, … , Jeffrey L. Platt, Marilia Cascalho
Mayara Garcia de Mattos Barbosa, … , Jeffrey L. Platt, Marilia Cascalho
Published March 26, 2021
Citation Information: JCI Insight. 2021;6(9):e147386. https://doi.org/10.1172/jci.insight.147386.
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Research Article COVID-19 Immunology

IgV somatic mutation of human anti–SARS-CoV-2 monoclonal antibodies governs neutralization and breadth of reactivity

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Abstract

Abs that neutralize SARS-CoV-2 are thought to provide the most immediate and effective treatment for those severely afflicted by this virus. Because coronavirus potentially diversifies by mutation, broadly neutralizing Abs are especially sought. Here, we report a possibly novel approach to rapid generation of potent broadly neutralizing human anti–SARS-CoV-2 Abs. We isolated SARS-CoV-2 spike protein–specific memory B cells by panning from the blood of convalescent subjects after infection with SARS-CoV-2 and sequenced and expressed Ig genes from individual B cells as human mAbs. All of 43 human mAbs generated in this way neutralized SARS-CoV-2. Eighteen of the forty-three human mAbs exhibited half-maximal inhibitory concentrations (IC50) of 6.7 × 10–12 M to 6.7 × 10–15 M for spike-pseudotyped virus. Seven of the human mAbs also neutralized (with IC50 < 6.7 × 10–12 M) viruses pseudotyped with mutant spike proteins (including receptor-binding domain mutants and the S1 C-terminal D614G mutant). Neutralization of the Wuhan Hu-1 founder strain and of some variants decreased when coding sequences were reverted to germline, suggesting that potency of neutralization was acquired by somatic hypermutation and selection of B cells. These results indicate that infection with SARS-CoV-2 evokes high-affinity B cell responses, some products of which are broadly neutralizing and others highly strain specific. We also identify variants that would potentially resist immunity evoked by infection with the Wuhan Hu-1 founder strain or by vaccines developed with products of that strain, suggesting evolutionary courses that SARS-CoV-2 could take.

Authors

Mayara Garcia de Mattos Barbosa, Hui Liu, Daniel Huynh, Greg Shelley, Evan T. Keller, Brian T. Emmer, Emily Sherman, David Ginsburg, Andrew A. Kennedy, Andrew W. Tai, Christiane Wobus, Carmen Mirabeli, Thomas M. Lanigan, Milagros Samaniego, Wenzhao Meng, Aaron M. Rosenfeld, Eline T. Luning Prak, Jeffrey L. Platt, Marilia Cascalho

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Figure 4

Neutralization of virus pseudotyped with SARS-CoV-2 Wuhan Hu-1 spikes by human mAbs.

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Neutralization of virus pseudotyped with SARS-CoV-2 Wuhan Hu-1 spikes by...
Highly mutated mAbs were cloned and expressed on 293T/17 cells. The supernatants were collected, and the amount of IgG was measured by ELISA. Serially diluted Abs were incubated with viruses pseudotyped with the reference (Wuhan Hu-1) or mutant spikes, and infection of 293T-ACE2 cells was assessed by luminescence. The Ab concentration that inhibits 50% of infection (IC50) was calculated for each sample. (A) The neutralization curves are depicted for 40 of 43 mAbs isolated to illustrate the breath of neutralization potency. Curves were obtained from 10 serial dilutions measured in duplicate. (B) The IC50 for each of the isolated mAbs. Error bars represent mean ± SEM. (C) The neutralization curve of mAb 19 with SARS-CoV-2 live virus, Washington USA-WA1/2020 clinical isolate, and SARS-CoV-2 Wuhan Hu-1 spike-pseudotyped virus. Results were obtained from 8 serial dilutions. (D) The linear correlation of IC50 and number of mutations in the VH and VL genes for the 11 most potent mAbs. Analysis was by the simple linear regression followed by Spearman’s r test functions of Prism 9. (E) Neutralization curves of viruses pseudotyped with SARS-CoV-2 Wuhan Hu-1 spike of mAbs 5, 13, 15, and 20 mutated and in germline configuration. Neutralization data curves were analyzed by the nonlinear fit function of Prism 9 and the absolute IC50 was calculated when possible. Data reflect typical plots from at least 2 independent experiments.

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