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An immune-based biomarker signature is associated with mortality in COVID-19 patients
Michael S. Abers, … , Michail S. Lionakis, Luigi D. Notarangelo
Michael S. Abers, … , Michail S. Lionakis, Luigi D. Notarangelo
Published November 24, 2020
Citation Information: JCI Insight. 2021;6(1):e144455. https://doi.org/10.1172/jci.insight.144455.
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Research Article COVID-19 Immunology

An immune-based biomarker signature is associated with mortality in COVID-19 patients

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Abstract

Immune and inflammatory responses to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) contribute to disease severity of coronavirus disease 2019 (COVID-19). However, the utility of specific immune-based biomarkers to predict clinical outcome remains elusive. Here, we analyzed levels of 66 soluble biomarkers in 175 Italian patients with COVID-19 ranging from mild/moderate to critical severity and assessed type I IFN–, type II IFN–, and NF-κB–dependent whole-blood transcriptional signatures. A broad inflammatory signature was observed, implicating activation of various immune and nonhematopoietic cell subsets. Discordance between IFN-α2a protein and IFNA2 transcript levels in blood suggests that type I IFNs during COVID-19 may be primarily produced by tissue-resident cells. Multivariable analysis of patients’ first samples revealed 12 biomarkers (CCL2, IL-15, soluble ST2 [sST2], NGAL, sTNFRSF1A, ferritin, IL-6, S100A9, MMP-9, IL-2, sVEGFR1, IL-10) that when increased were independently associated with mortality. Multivariate analyses of longitudinal biomarker trajectories identified 8 of the aforementioned biomarkers (IL-15, IL-2, NGAL, CCL2, MMP-9, sTNFRSF1A, sST2, IL-10) and 2 additional biomarkers (lactoferrin, CXCL9) that were substantially associated with mortality when increased, while IL-1α was associated with mortality when decreased. Among these, sST2, sTNFRSF1A, IL-10, and IL-15 were consistently higher throughout the hospitalization in patients who died versus those who recovered, suggesting that these biomarkers may provide an early warning of eventual disease outcome.

Authors

Michael S. Abers, Ottavia M. Delmonte, Emily E. Ricotta, Jonathan Fintzi, Danielle L. Fink, Adriana A. Almeida de Jesus, Kol A. Zarember, Sara Alehashemi, Vasileios Oikonomou, Jigar V. Desai, Scott W. Canna, Bita Shakoory, Kerry Dobbs, Luisa Imberti, Alessandra Sottini, Eugenia Quiros-Roldan, Francesco Castelli, Camillo Rossi, Duilio Brugnoni, Andrea Biondi, Laura Rachele Bettini, Mariella D’Angio’, Paolo Bonfanti, Riccardo Castagnoli, Daniela Montagna, Amelia Licari, Gian Luigi Marseglia, Emily F. Gliniewicz, Elana Shaw, Dana E. Kahle, Andre T. Rastegar, Michael Stack, Katherine Myint-Hpu, Susan L. Levinson, Mark J. DiNubile, Daniel W. Chertow, Peter D. Burbelo, Jeffrey I. Cohen, Katherine R. Calvo, John S. Tsang, NIAID COVID-19 Consortium, Helen C. Su, John I. Gallin, Douglas B. Kuhns, Raphaela Goldbach-Mansky, Michail S. Lionakis, Luigi D. Notarangelo

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Figure 5

Type I IFN mediators are increased in COVID-19 patients, but the transcriptional response of type I IFN genes in circulating immune cells is disproportionally low.

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Type I IFN mediators are increased in COVID-19 patients, but the transcr...
(A–B) Shown are (A) IFN-α2a and (B) CXCL10 levels in peripheral blood of COVID-19 patients with various severity groups (n = 94–114 depending on the biomarker) relative to healthy volunteers (HV; n = 45–67 depending on the biomarker). Groups were compared by Kruskal-Wallis test. When P < 0.05, pairwise comparisons were made using Dunn’s test with Benjamini-Hochberg adjustment for multiple comparisons. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001. (C) Expression of 28 type I IFN–induced genes was measured by NanoString and expressed as log10-transformed summary z scores. Shown is comparison of HVs (n = 22), COVID-19 patients (n = 84), and patients with the NLRP3 inflammasomopathy NOMID (n = 11); and the type I IFNopathies CANDLE (n = 9), SAVI (n = 9), and AGS (n = 7); the CANDLE mimic NEMO-NDAS (n = 9); and the IL-18opathy IL-18 PAP/MAS (n = 6). NOMID, neonatal onset multisystem inflammatory disease; CANDLE, chronic atypical neutrophilic dermatosis with lipodystrophy and elevated temperature; SAVI, STING-associated vasculopathy with onset in infancy; AGS, Aicardi-Goutières syndrome; NEMO-NDAS, NF-κB essential modulator-deleted exon 5 autoinflammatory syndrome; IL18 PAP/MAS, IL-18–mediated pulmonary alveolar proteinosis and macrophage activation syndrome. (D) Correlation of the transcript levels of IFNA2 in whole blood with blood levels of IFN-α2a in patients with COVID-19 (n = 22). (E) Correlation of the 28 type I IFN–induced gene score with transcript levels of IFNA2 in patients with COVID-19 (left panel) (n = 73) compared with the indicated type I IFNopathies (right panel) (n = 34).
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