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Exhausted-like CD8+ T cell phenotypes linked to C-peptide preservation in alefacept-treated T1D subjects
Kirsten E. Diggins, Elisavet Serti, Virginia Muir, Mario Rosasco, TingTing Lu, Elisa Balmas, Gerald Nepom, S. Alice Long, Peter S. Linsley
Kirsten E. Diggins, Elisavet Serti, Virginia Muir, Mario Rosasco, TingTing Lu, Elisa Balmas, Gerald Nepom, S. Alice Long, Peter S. Linsley
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Research Article Immunology

Exhausted-like CD8+ T cell phenotypes linked to C-peptide preservation in alefacept-treated T1D subjects

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Abstract

Clinical trials of biologic therapies in type 1 diabetes (T1D) aim to mitigate autoimmune destruction of pancreatic β cells through immune perturbation and serve as resources to elucidate immunological mechanisms in health and disease. In the T1DAL trial of alefacept (LFA3-Ig) in recent-onset T1D, endogenous insulin production was preserved in 30% of subjects for 2 years after therapy. Given our previous findings linking exhausted-like CD8+ T cells to beneficial response in T1D trials, we applied unbiased analyses to sorted CD8+ T cells to evaluate their potential role in T1DAL. Using RNA sequencing, we found that greater insulin C-peptide preservation was associated with a module of activation- and exhaustion-associated genes. This signature was dissected into 2 CD8 memory phenotypes through correlation with cytometry data. These cells were hypoproliferative, shared expanded rearranged TCR junctions, and expressed exhaustion-associated markers including TIGIT and KLRG1. The 2 phenotypes could be distinguished by reciprocal expression of CD8+ T and NK cell markers (GZMB, CD57, and inhibitory killer cell immunoglobulin-like receptor [iKIR] genes), versus T cell activation and differentiation markers (PD-1 and CD28). These findings support previous evidence linking exhausted-like CD8+ T cells to successful immune interventions for T1D, while suggesting that multiple inhibitory mechanisms can promote this beneficial cell state.

Authors

Kirsten E. Diggins, Elisavet Serti, Virginia Muir, Mario Rosasco, TingTing Lu, Elisa Balmas, Gerald Nepom, S. Alice Long, Peter S. Linsley

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Figure 5

CD57+ and PD-1+ T cells shared a subset of TCRs but differentially expressed features of NK cytotoxicity and T cell activation.

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CD57+ and PD-1+ T cells shared a subset of TCRs but differentially expre...
(A) Each segment of the Circos plot represents a TCR junction found in PD-1+ (green) or CD57+ (gray) cells from the 4 sorted samples. Color bars denote donors. Arcs connect junctions shared between samples. (B) Differentially expressed genes identified by limma analysis contrasting PD-1+ (left) and CD57+ (right) cells. Genes whose differential expression reached significance are highlighted in blue and red (logFC > 1; FDR-adjusted P < 0.1). (C) Network shows connected network of genes expressed significantly higher in CD57+ than PD-1+ cells. Key NKRs are highlighted in red. (D) Selection of enriched pathways in CD57+ cells are shown with respective significance of GO term gene overrepresentation in set. (E) Relative expression of pathway-associated genes in CD57+ and PD-1+ cells, calculated as the mean scaled expression of the gene across all samples. (F) Selection of enriched pathways in the genes differentially expression in PD-1+ cells, determined as in D. (G) Relative expression of pathway-associated genes in PD-1+ and CD57+ cells, analyzed as in E.

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