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Tumor genotype, location, and malignant potential shape the immunogenicity of primary untreated gastrointestinal stromal tumors
Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Dei Tos Angelo Paolo, Roberta Maestro
Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Dei Tos Angelo Paolo, Roberta Maestro
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Research Article Oncology

Tumor genotype, location, and malignant potential shape the immunogenicity of primary untreated gastrointestinal stromal tumors

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Abstract

Intratumoral immune infiltrate was recently reported in gastrointestinal stromal tumors (GISTs). However, the tumor-intrinsic factors that dictate GIST immunogenicity are still largely undefined. To shed light on this issue, a large cohort (82 samples) of primary untreated GISTs, representative of major clinicopathological variables, was investigated by an integrated immunohistochemical, transcriptomic, and computational approach. Our results indicate that tumor genotype, location, and malignant potential concur to shape the immunogenicity of primary naive GISTs. Immune infiltration was greater in overt GISTs compared with that in lesions with limited malignant potential (miniGISTs), in KIT/PDGFRA-mutated tumors compared with that in KIT/PDGFRA WT tumors, and in PDGFRA-mutated compared with KIT-mutated GISTs. Within the KIT-mutated subset, a higher degree of immune colonization was detected in the intestine. Immune hot tumors showed expression patterns compatible with a potentially proficient but curbed antigen-specific immunity, hinting at sensitivity to immunomodulatory treatments. Poorly infiltrated GISTs, primarily KIT/PDGFRA WT intestinal tumors, showed activation of Hedgehog and WNT/β-catenin immune excluding pathways. This finding discloses a potential therapeutic vulnerability, as the targeting of these pathways might prove effective by both inhibiting pro-oncogenic signals and fostering antitumor immune responses. Finally, an intriguing anticorrelation between immune infiltration and ANO1/DOG1 expression was observed, suggesting an immunomodulatory activity for anoctamin-1.

Authors

Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Dei Tos Angelo Paolo, Roberta Maestro

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Figure 6

Pathways involved in poorly infiltrated GISTs.

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Pathways involved in poorly infiltrated GISTs.
(A) GSEA analyses indicat...
(A) GSEA analyses indicating the enrichment of HH and WNT/β-catenin MSigDB hallmark signatures in immune cold GIST (low IIS), compared with immune hot GIST (high IIS) in the whole series (top) and in the intestinal subset (bottom). (B) Anticorrelation of IIS with HH and WNT/β-catenin activation scores (MSigDB Hallmark) in intestinal GIST. Color-coded z score values are displayed. (C and D) Negative correlation between ANO1 gene expression and immune infiltration scores in the whole series of 77 cases (C) and in intestinal and gastric GIST, separately (D). Site, type, mitotic index, and driver gene are as per indicated color-coded labels. z Score scale is as in B. (E) Reactome pathway analysis of the genes differentially expressed following ANO1 silencing in GIST-T1 cells. The top most statistically significant pathways (–log P value, hypergeometric test) are shown. Immune-related pathways are indicated by an asterisk. The input gene list was from ref. 44. UNK, driver mutation unknown; GSEA, gene set enrichment analysis; HH, Hedgehog; IIS, immune infiltration score.

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