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Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection
Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
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Research Article Immunology Transplantation

Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection

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Abstract

Myeloid cells are increasingly recognized as major players in transplant rejection. Here, we used a murine kidney transplantation model and single cell transcriptomics to dissect the contribution of myeloid cell subsets and their potential signaling pathways to kidney transplant rejection. Using a variety of bioinformatic techniques, including machine learning, we demonstrate that kidney allograft–infiltrating myeloid cells followed a trajectory of differentiation from monocytes to proinflammatory macrophages, and they exhibited distinct interactions with kidney allograft parenchymal cells. While this process correlated with a unique pattern of myeloid cell transcripts, a top gene identified was Axl, a member of the receptor tyrosine kinase family Tyro3/Axl/Mertk (TAM). Using kidney transplant recipients with Axl gene deficiency, we further demonstrate that Axl augmented intragraft differentiation of proinflammatory macrophages, likely via its effect on the transcription factor Cebpb. This, in turn, promoted intragraft recruitment, differentiation, and proliferation of donor-specific T cells, and it enhanced early allograft inflammation evidenced by histology. We conclude that myeloid cell Axl expression identified by single cell transcriptomics of kidney allografts in our study plays a major role in promoting intragraft myeloid cell and T cell differentiation, and it presents a potentially novel therapeutic target for controlling kidney allograft rejection and improving kidney allograft survival.

Authors

Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo

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Figure 7

Axl promotes T cell recruitment and activation in kidney allografts.

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Axl promotes T cell recruitment and activation in kidney allografts.
(A)...
(A) Scatter plots of the total number of graft-infiltrating CD4+ and CD8+ T cells in Axl WT or -KO recipients on d3 after transplantation (n = 7–8 per group). *P < 0.05 (t test). (B) Expression of chemokines Cxcl9 and Cxcl11 measured by qPCR in whole kidney allografts retrieved on d3 (n = 5 per group). *P < 0.05 (t test). (C) Representative FACS plots showing cell activation (CD44), effector function (IFN-γ), and proliferation (Ki-67) of graft-infiltrating CD4+ and CD8+ T cells in Axl WT or -KO recipients. Scatter plots showing statistical comparisons between the groups. n = 4 per group. *P < 0.05 (t test). (D) Purified alloantigen-specific TCR75 CD4+ T cells (2.5 × 105 per mouse) were adoptively transferred into Axl WT and -KO recipients 1 day prior to transplantation. Representative FACS plots demonstrating intragraft TCR75 CD4+ T cells in Axl WT and -KO recipients on d3 after transplantation. TCR75 CD4+ T cells were identified by CD45.1 and TCR Vβ8.3. Cells were gated on total CD3+CD4+ T cells (n = 2 per group). Scatter plot demonstrating percentage of TCR75 cells among total CD3+CD4+ T cells in each group.

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