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Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection
Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
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Research Article Immunology Transplantation

Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection

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Abstract

Myeloid cells are increasingly recognized as major players in transplant rejection. Here, we used a murine kidney transplantation model and single cell transcriptomics to dissect the contribution of myeloid cell subsets and their potential signaling pathways to kidney transplant rejection. Using a variety of bioinformatic techniques, including machine learning, we demonstrate that kidney allograft–infiltrating myeloid cells followed a trajectory of differentiation from monocytes to proinflammatory macrophages, and they exhibited distinct interactions with kidney allograft parenchymal cells. While this process correlated with a unique pattern of myeloid cell transcripts, a top gene identified was Axl, a member of the receptor tyrosine kinase family Tyro3/Axl/Mertk (TAM). Using kidney transplant recipients with Axl gene deficiency, we further demonstrate that Axl augmented intragraft differentiation of proinflammatory macrophages, likely via its effect on the transcription factor Cebpb. This, in turn, promoted intragraft recruitment, differentiation, and proliferation of donor-specific T cells, and it enhanced early allograft inflammation evidenced by histology. We conclude that myeloid cell Axl expression identified by single cell transcriptomics of kidney allografts in our study plays a major role in promoting intragraft myeloid cell and T cell differentiation, and it presents a potentially novel therapeutic target for controlling kidney allograft rejection and improving kidney allograft survival.

Authors

Anil Dangi, Naveen R. Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo

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Figure 6

Axl promotes intragraft differentiation of inflammatory macrophages in kidney allografts.

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Axl promotes intragraft differentiation of inflammatory macrophages in k...
(A) Scheme of allogeneic kidney transplantation and graft harvest. BALB/c kidneys were transplanted into bilaterally nephrectomized Axl WT or -KO B6 recipients. Kidney allografts were retrieved on d3 after transplantation for FACS analysis. (B) Representative FACS plots showing F4/80 (left panels) and CD64 (right panels) among graft-infiltrating CD11b+ cells in kidney allografts from WT or KO recipients. Scatter plot showing the total number of various subsets of myeloid cells (with corresponding colors to their respective gates). n = 3 per group. *P < 0.05 (1-way ANOVA). (C) Expression of MHC II and CD86 by various subsets of myeloid cells shown in B (with corresponding colors to their respective gates). (D) Gene expression of Cebpb determined by qPCR in cultured BMDC from Axl WT and -KO mice. In WT BMDM, Axl kinase activity was further inhibited by bemcentinib (1 μM, during the last 2 days of culture). n = 3 per group. *P < 0.05 (1-way ANOVA).

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