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Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
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Research Article Immunology

Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses

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Abstract

Rituximab, a B cell–depleting therapy, is indicated for treating a growing number of autoantibody-mediated autoimmune disorders. However, relapses can occur after treatment, and autoantibody-producing B cell subsets may be found during relapses. It is not understood whether these autoantibody-producing B cell subsets emerge from the failed depletion of preexisting B cells or are generated de novo. To further define the mechanisms that cause postrituximab relapse, we studied patients with autoantibody-mediated muscle-specific kinase (MuSK) myasthenia gravis (MG) who relapsed after treatment. We carried out single-cell transcriptional and B cell receptor profiling on longitudinal B cell samples. We identified clones present before therapy that persisted during relapse. Persistent B cell clones included both antibody-secreting cells and memory B cells characterized by gene expression signatures associated with B cell survival. A subset of persistent antibody-secreting cells and memory B cells were specific for the MuSK autoantigen. These results demonstrate that rituximab is not fully effective at eliminating autoantibody-producing B cells and provide a mechanistic understanding of postrituximab relapse in MuSK MG.

Authors

Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor

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Figure 7

Identification of B cell clusters associated with resistance to RTX depletion (cluster 3).

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Identification of B cell clusters associated with resistance to RTX depl...
(A) Visualization of initial shared nearest-neighbor clustering of circulating B cells post-RTX by t-SNE with labels over clusters. (B) B cells that were clonally related to cells in the pre-RTX repertoire are indicated (red dot if the pre- and post-RTX V(D)J sequence is identical at the nucleotide level, and black dot otherwise). (C) The frequency of each cluster (by cell) among the set of persistent B cells is shown. (D) The expression of the receptor target of RTX, CD20 (MS4A1), is presented for members of cluster 3 and members of other memory B cell clusters. The expression of known receptors for BAFF and APRIL (TACI or TNFRSF13B, BAFF-R or TNFRSF13C, BCMA or TNFRSF17) is also presented. Differential expression of each gene was assessed using paired 2-tailed t tests. Horizontal bars show averages, with values belonging to the same patient paired with a gray line. Data for the same n = 3 patients are shown for all panels. Violin plots are used in place of error bars to show the full range of values. Statistical differences are shown in D (**P < 0.01; *P < 0.05).

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