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Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
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Research Article Immunology

Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses

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Abstract

Rituximab, a B cell–depleting therapy, is indicated for treating a growing number of autoantibody-mediated autoimmune disorders. However, relapses can occur after treatment, and autoantibody-producing B cell subsets may be found during relapses. It is not understood whether these autoantibody-producing B cell subsets emerge from the failed depletion of preexisting B cells or are generated de novo. To further define the mechanisms that cause postrituximab relapse, we studied patients with autoantibody-mediated muscle-specific kinase (MuSK) myasthenia gravis (MG) who relapsed after treatment. We carried out single-cell transcriptional and B cell receptor profiling on longitudinal B cell samples. We identified clones present before therapy that persisted during relapse. Persistent B cell clones included both antibody-secreting cells and memory B cells characterized by gene expression signatures associated with B cell survival. A subset of persistent antibody-secreting cells and memory B cells were specific for the MuSK autoantigen. These results demonstrate that rituximab is not fully effective at eliminating autoantibody-producing B cells and provide a mechanistic understanding of postrituximab relapse in MuSK MG.

Authors

Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor

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Figure 6

Memory B cells have distinct transcriptional and repertoire features associated with persistence.

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Memory B cells have distinct transcriptional and repertoire features ass...
(A) The normalized gene expression of CD20 (the receptor target of RTX, gene symbol MS4A1) and BAFF or APRIL receptors (TACI or TNFRSF13B, BAFF-R or TNFRSF13C, BCMA or TNFRSF17) is presented for persistent and nonpersistent members of the memory B cell cluster for each patient for cells of a given status. Normalized gene expression values are computed from counts of gene expression transcripts. Paired 2-tailed t tests were used to test for the significant differential expression of each gene. (B) Individual SHM frequencies for persistent compared with nonpersistent cells are presented for memory B cell cluster members. Only mean SHM frequencies are computed for isotypes with more than 3 V(D)J sequences. Horizontal bars show the average SHM frequency for a given cluster. Paired 2-tailed t tests were used to assess the significance of differences in mutation frequency. (C) Overall constant region usage frequencies are quantified for persistent compared with nonpersistent memory B cell cluster members per patient. Horizontal bars show the average frequency of constant region usage across patients. Two-way ANOVA was performed to assess significance for an overall isotype usage difference between nonpersistent compared with persistent clones across isotype. Paired 2-tailed t tests were used to assess the significance for the differential usage of each constant region. (D) Clonal expansion expressed as Simpson’s diversity of persistent compared with nonpersistent memory B cell cluster members. A 1-tailed t test was used to assess the significance of the null hypothesis that persistent clones would not be less diverse than nonpersistent clones. Horizontal bars show the average diversity of memory B cell cluster members for each patient of a given status. Values belonging to the same patient are paired with a gray line for all graphs in this panel. Data for the same n = 3 patients are shown for all panels. Violin plots are used in place of error bars to show the full range of values. Statistical differences are shown only when significant (***P < 0.001; **P < 0.01; *P < 0.05).

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