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Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
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Research Article Immunology

Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses

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Abstract

Rituximab, a B cell–depleting therapy, is indicated for treating a growing number of autoantibody-mediated autoimmune disorders. However, relapses can occur after treatment, and autoantibody-producing B cell subsets may be found during relapses. It is not understood whether these autoantibody-producing B cell subsets emerge from the failed depletion of preexisting B cells or are generated de novo. To further define the mechanisms that cause postrituximab relapse, we studied patients with autoantibody-mediated muscle-specific kinase (MuSK) myasthenia gravis (MG) who relapsed after treatment. We carried out single-cell transcriptional and B cell receptor profiling on longitudinal B cell samples. We identified clones present before therapy that persisted during relapse. Persistent B cell clones included both antibody-secreting cells and memory B cells characterized by gene expression signatures associated with B cell survival. A subset of persistent antibody-secreting cells and memory B cells were specific for the MuSK autoantigen. These results demonstrate that rituximab is not fully effective at eliminating autoantibody-producing B cells and provide a mechanistic understanding of postrituximab relapse in MuSK MG.

Authors

Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor

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Figure 2

B cell clones that overlap pre-RTX and post-RTX bulk IGH repertoires (i.e., persistent clones) are associated with switched isotypes and increased somatic hypermutation frequency.

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B cell clones that overlap pre-RTX and post-RTX bulk IGH repertoires (i....
(A) Venn diagrams show counts of clones present at pre-RTX and post-RTX time points and those that overlap both time points for all study subjects (the relative area of each circle corresponds to the proportion of clones found at different time points for each patient). (B) Shared B cell clones between pre-RTX and post-RTX time points quantified as Bray-Curtis overlap for the same patient (intrapatient) or across different patients (interpatient). Horizontal bars show the mean overlap of each comparison. A 1-tailed t test was used to assess the significance of the null hypothesis that intrapatient overlap was not higher than interpatient overlap. Overall distribution of frequencies of different isotypes (C) and average somatic hypermutation frequencies (D) among the set of sequences belonging to persistent and nonpersistent clones during post-RTX relapse for study subjects. Two-way ANOVA was performed to assess significance for an overall somatic hypermutation frequency difference and isotype usage frequency difference between nonpersistent compared with persistent clones across isotypes; specifically the effect of isotype, persistence, and interaction between the 2 was assessed for significance. Post hoc 2-tailed t tests were also performed, although no significant differences were observed in C and D. Data for the same n = 3 patients are shown for all panels. Violin plots are used in place of error bars to show the full range of values. Statistical differences are shown only when significant (***P < 0.001; **P < 0.01; *P < 0.05).

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