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Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor
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Research Article Immunology

Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses

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Abstract

Rituximab, a B cell–depleting therapy, is indicated for treating a growing number of autoantibody-mediated autoimmune disorders. However, relapses can occur after treatment, and autoantibody-producing B cell subsets may be found during relapses. It is not understood whether these autoantibody-producing B cell subsets emerge from the failed depletion of preexisting B cells or are generated de novo. To further define the mechanisms that cause postrituximab relapse, we studied patients with autoantibody-mediated muscle-specific kinase (MuSK) myasthenia gravis (MG) who relapsed after treatment. We carried out single-cell transcriptional and B cell receptor profiling on longitudinal B cell samples. We identified clones present before therapy that persisted during relapse. Persistent B cell clones included both antibody-secreting cells and memory B cells characterized by gene expression signatures associated with B cell survival. A subset of persistent antibody-secreting cells and memory B cells were specific for the MuSK autoantigen. These results demonstrate that rituximab is not fully effective at eliminating autoantibody-producing B cells and provide a mechanistic understanding of postrituximab relapse in MuSK MG.

Authors

Ruoyi Jiang, Miriam L. Fichtner, Kenneth B. Hoehn, Minh C. Pham, Panos Stathopoulos, Richard J. Nowak, Steven H. Kleinstein, Kevin C. O’Connor

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Figure 1

Schematic diagram showing overall workflow from clinical data elements and sample collection to computational analysis of BCR repertoires along with a timeline of sample collection dates.

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Schematic diagram showing overall workflow from clinical data elements a...
(A) Three approaches were used for sequencing. First, bulk repertoires using next-generation sequencing by isolating unpaired IGH V(D)J sequences directly from RNA were generated. Second, paired heavy and light chain V(D)J sequences from circulating B cells expressed as recombinant antibodies and tested for antigen specificity were traced to pre-RTX repertoires. Finally, paired transcriptome and heavy and light chain V(D)J sequence repertoires from high-throughput emulsion-based single-cell sequencing was performed. These 3 types of repertoires were analyzed together in our analysis workflow for each patient across the sampled time points. (B) Timeline of clinical events, specimen collection, and B cell analysis for 3 patients with MG who experienced post-RTX relapses. Infusion describes a time point associated with a recorded infusion of RTX. Post-RTX describes an event associated with a disease exacerbation during which B cells were observed to secrete MuSK-specific autoantibodies. Pre-RTX describes any collection time point preceding post-RTX by an intervening infusion event. Dates of events are approximations.

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