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Commensal bacteria stimulate antitumor responses via T cell cross-reactivity
Catherine A. Bessell, Ariel Isser, Jonathan J. Havel, Sangyun Lee, David R. Bell, John W. Hickey, Worarat Chaisawangwong, Joan Glick Bieler, Raghvendra Srivastava, Fengshen Kuo, Tanaya Purohit, Ruhong Zhou, Timothy A. Chan, Jonathan P. Schneck
Catherine A. Bessell, Ariel Isser, Jonathan J. Havel, Sangyun Lee, David R. Bell, John W. Hickey, Worarat Chaisawangwong, Joan Glick Bieler, Raghvendra Srivastava, Fengshen Kuo, Tanaya Purohit, Ruhong Zhou, Timothy A. Chan, Jonathan P. Schneck
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Research Article Immunology Oncology

Commensal bacteria stimulate antitumor responses via T cell cross-reactivity

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Abstract

Recent studies show gut microbiota modulate antitumor immune responses; one proposed mechanism is cross-reactivity between antigens expressed in commensal bacteria and neoepitopes. We found that T cells targeting an epitope called SVYRYYGL (SVY), expressed in the commensal bacterium Bifidobacterium breve (B. breve), cross-react with a model neoantigen, SIYRYYGL (SIY). Mice lacking B. breve had decreased SVY-reactive T cells compared with B. breve–colonized mice, and the T cell response was transferable by SVY immunization or by cohousing mice without Bifidobacterium with ones colonized with Bifidobacterium. Tumors expressing the model SIY neoantigen also grew faster in mice lacking B. breve compared with Bifidobacterium-colonized animals. B. breve colonization also shaped the SVY-reactive TCR repertoire. Finally, SVY-specific T cells recognized SIY-expressing melanomas in vivo and led to decreased tumor growth and extended survival. Our work demonstrates that commensal bacteria can stimulate antitumor immune responses via cross-reactivity and how bacterial antigens affect the T cell landscape.

Authors

Catherine A. Bessell, Ariel Isser, Jonathan J. Havel, Sangyun Lee, David R. Bell, John W. Hickey, Worarat Chaisawangwong, Joan Glick Bieler, Raghvendra Srivastava, Fengshen Kuo, Tanaya Purohit, Ruhong Zhou, Timothy A. Chan, Jonathan P. Schneck

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Figure 1

Commensal bacteria B. breve harbors the CD8+ T cell epitope SVY.

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Commensal bacteria B. breve harbors the CD8+ T cell epitope SVY.
(A) Gen...
(A) Genetic map of B. breve, highlighting the homology of a peptide derived from B. breve exopolysaccharide biosynthesis protein (EBP) to the model epitope KbSIY. (B) Jackson mice splenocytes and mesenteric lymph node cells were cultured with or without heat-killed bacteria and tested for SIY-specific T cell expansion by staining with SIY peptide–loaded Kb-Ig dimer on day 11. Live CD8+ lymphocytes were analyzed by flow cytometry for KbSIY binding, with frequency determined by subtracting unloaded Kb-Ig staining frequency. P value = 0.011 by 1-way ANOVA and Dunnett’s post hoc test for multiple comparisons. N = 7. Data represent mean ± SEM. (C) MHC stabilization assay: RMA-S cells were incubated overnight with peptide as indicated. Cell surface expression of H2-Kb was determined by flow cytometry. Reported values are relative to the H2-Kb mean fluorescence intensity (MFI) observed with 10 μM OVA peptide. mCMV, a non–Kb-restricted peptide, was used as a negative control. Data trended toward no difference between SIY and SVY groups. Data trended with no difference between SIY and SVY groups. N = 2. Data represent mean. (D) CD8+ T cells were isolated from the spleens of 2C TCR (SIY-reactive) transgenic mice and stained with 1 μg of cognate KbSIY-Ig, cross-reactive KbSVY-Ig, or irrelevant KbOVA-Ig. Representative data shown from 1 of 3 separate experiments. (E) Competitive off-rate binding assay of 2C CD8+ T cells with KbSIY or KbSVY peptide MHC dimer over time by the addition of 1B2 TCR-binding antibody. Cells were gated on CD8+. Cells were stained with KbOVA as a negative control or experimental pMHC to gate on antigen-specific cells over time. This competitive binding assay was performed twice, with similar koff rates determined each time.

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