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Activation of CAR and non-CAR T cells within the tumor microenvironment following CAR T cell therapy
Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig
Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig
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Research Article Oncology

Activation of CAR and non-CAR T cells within the tumor microenvironment following CAR T cell therapy

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Abstract

Mechanisms of chimeric antigen receptor (CAR) T cell–mediated antitumor immunity and toxicity remain poorly characterized because few studies examine the intact tumor microenvironment (TME) following CAR T cell infusion. Axicabtagene ciloleucel is an autologous anti-CD19 CAR T cell therapy approved for patients with large B cell lymphoma. We devised multiplex immunostaining and ISH assays to interrogate CAR T cells and other immune cell infiltrates in biopsies of diffuse large B cell lymphoma following axicabtagene ciloleucel infusion. We found that a majority of intratumoral CAR T cells expressed markers of T cell activation but, unexpectedly, constituted ≤5% of all T cells within the TME 5 days or more after therapy. Large numbers of T cells without CAR were also activated within the TME after axicabtagene ciloleucel infusion; these cells were positive for Ki-67, IFN-γ, granzyme B (GzmB), and/or PD-1 and were found at the highest levels in biopsies with CAR T cells. Additionally, non-CAR immune cells were the exclusive source of IL-6, a cytokine associated with cytokine release syndrome, and were found at their highest numbers in biopsies with CAR T cells. These data suggest that intratumoral CAR T cells are associated with non-CAR immune cell activation within the TME with both beneficial and pathological effects.

Authors

Pei-Hsuan Chen, Mikel Lipschitz, Jason L. Weirather, Caron Jacobson, Philippe Armand, Kyle Wright, F. Stephen Hodi, Zachary J. Roberts, Stuart A. Sievers, John Rossi, Adrian Bot, William Go, Scott J. Rodig

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Figure 4

Non-CAR T cell activation before, and following, axicabtagene ciloleucel.

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Non-CAR T cell activation before, and following, axicabtagene ciloleucel...
Representative multiplex IF (A and D) and ISH (G) staining and quantitative image analysis data (B, C, E, F, H, and I) from biopsy samples obtained before axicabtagene ciloleucel infusion (Pre AC [n = 7, purple]) and following axicabtagene ciloleucel infusion (Post AC) further divided according to whether or not CAR T cells were detected in the corresponding biopsy sample (CAR– [n = 12, green] and CAR+ [n = 6, red]). (A) Representative mIF staining with anti-Ki67 (magenta), anti-CD3 (white), anti-CAR (KIP1, green), and DAPI (blue) in a biopsy obtained 7 days after axicabtagene ciloleucel. (B) The densities of non-CAR T cells in cell cycle (CD3+Ki67+CAR–) for cases in the indicated sample groups. The Kruskal-Wallis (KW) test indicated a significant difference in cell densities between conditions (P = 0.003). (C) The densities of non-CAR T cells expressing PD-1 (CD4+PD1+CAR– and CD8+PD1+CAR–) for cases in the indicated sample groups. One of the twelve CAR– samples could not be evaluated (n = 11). The KW test was significant (P = 0.006). (D) Representative mIF staining with anti-GZMB (red), CD3 (white), anti-CAR (KIP1, green), and DAPI (blue) in a biopsy obtained 7 days after axicabtagene ciloleucel. (E) The densities of non-CAR T cells expressing granzyme B (CD3+GzmB+CAR–) for cases in the indicated sample groups. The KW test was significant (P = 0.04). (F) The densities of non-CAR and non–T immune cells expressing granzyme B (CD3–GzmB+CAR–) for cases in the indicated sample groups. The KW test was significant (P = 0.01). Brackets above the box-and-whisker plots (B, C, E, and F) indicate comparators in 2-sided Mann-Whitney U test followed by Benjamini-Hochberg (BH) correction for multiple tests. *adjusted P < 0.05, **adjusted P < 0.01. (G) Representative multiplex ISH staining with antisense probes for CAR transcripts (brown) and/or IFNG transcripts (red) in a biopsy obtained 7 days after axicabtagene ciloleucel. Arrows identify individual cells positive for CAR (brown arrow) and IFNG (red arrow). (H) The densities of non-CAR cells expressing IFNG transcript for cases divided according to whether CAR-expressing cells were or were not detected in the biopsy. Two-sided Mann-Whitney U test. **P < 0.01. (I) Correlation between the percentage of total cells expressing CAR transcripts and the percentage of non-CAR cells expressing IFNG transcripts among biopsy samples with CAR positive cells detected. Pearson correlation P = 0.02, r = 0.88. Error bars represent mean ± SEM. Original magnification, ×200 (A and D).

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