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Impaired lymphocyte function and differentiation in CTPS1-deficient patients result from a hypomorphic homozygous mutation
Emmanuel Martin, Norbert Minet, Anne-Claire Boschat, Sylvia Sanquer, Steicy Sobrino, Christelle Lenoir, Jean Pierre de Villartay, Maria Leite-de-Moraes, Capucine Picard, Claire Soudais, Tim Bourne, Sophie Hambleton, Stephen M. Hughes, Robert F. Wynn, Tracy A. Briggs, Genomics England Research Consortium, Smita Patel, Monica G. Lawrence, Alain Fischer, Peter D. Arkwright, Sylvain Latour
Emmanuel Martin, Norbert Minet, Anne-Claire Boschat, Sylvia Sanquer, Steicy Sobrino, Christelle Lenoir, Jean Pierre de Villartay, Maria Leite-de-Moraes, Capucine Picard, Claire Soudais, Tim Bourne, Sophie Hambleton, Stephen M. Hughes, Robert F. Wynn, Tracy A. Briggs, Genomics England Research Consortium, Smita Patel, Monica G. Lawrence, Alain Fischer, Peter D. Arkwright, Sylvain Latour
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Research Article Immunology

Impaired lymphocyte function and differentiation in CTPS1-deficient patients result from a hypomorphic homozygous mutation

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Abstract

Cytidine triphosphate (CTP) synthetase 1 (CTPS1) deficiency is caused by a unique homozygous frameshift splice mutation (c.1692-1G>C, p.T566Dfs26X). CTPS1-deficient patients display severe bacterial and viral infections. CTPS1 is responsible for CTP nucleotide de novo production involved in DNA/RNA synthesis. Herein, we characterized in depth lymphocyte defects associated with CTPS1 deficiency. Immune phenotyping performed in 7 patients showed absence or low numbers of mucosal-associated T cells, invariant NKT cells, memory B cells, and NK cells, whereas other subsets were normal. Proliferation and IL-2 secretion by T cells in response to TCR activation were markedly decreased in all patients, while other T cell effector functions were preserved. The CTPS1T566Dfs26X mutant protein was found to be hypomorphic, resulting in 80%–90% reduction of protein expression and CTPS activity in cells of patients. Inactivation of CTPS1 in a T cell leukemia fully abolished cell proliferation. Expression of CTPS1T566Dfs26X failed to restore proliferation of CTPS1-deficient leukemia cells to normal, except when forcing its expression to a level comparable to that of WT CTPS1. This indicates that CTPS1T566Dfs26X retained normal CTPS activity, and thus the loss of function of CTPS1T566Dfs26X is completely attributable to protein instability. This study supports that CTPS1 represents an attractive therapeutic target to selectively inhibit pathological T cell proliferation, including lymphoma.

Authors

Emmanuel Martin, Norbert Minet, Anne-Claire Boschat, Sylvia Sanquer, Steicy Sobrino, Christelle Lenoir, Jean Pierre de Villartay, Maria Leite-de-Moraes, Capucine Picard, Claire Soudais, Tim Bourne, Sophie Hambleton, Stephen M. Hughes, Robert F. Wynn, Tracy A. Briggs, Genomics England Research Consortium, Smita Patel, Monica G. Lawrence, Alain Fischer, Peter D. Arkwright, Sylvain Latour

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Figure 7

Preserved enzymatic activity of CTPS1D18 protein.

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Preserved enzymatic activity of CTPS1D18 protein.
(A) Immunoblots for CT...
(A) Immunoblots for CTPS1 and actin protein expression in CTPS1-KO Jurkat cell lines complemented with GFP, CTPS1Δ18 plus GFP, or CTPS1 plus GFP and maintained in culture with or without 200 μM of cytidine. (B) Percentages of GFP+ cells of a coculture of CTPS1-KO Jurkat cells complemented with GFP (green symbols), CTPS1Δ18 plus GFP (red symbols), or CTPS1 plus GFP (gray symbols) with noncomplemented CTPS1-KO Jurkat cells at a 1:10 ratio for 16 days. Coculture was supplemented with 200 μM cytidine (triangle) or not (circle). Complemented cells were preselected for high CTPS1 expression by cytidine starvation before the coculture. Percentage values were obtained from FACS analysis. The values represent the mean ± SEM of 2–3 independent experiments. (C) Dot plot graph representing the quantification of CTPS activity in lysates of WT Jurkat cells (black circle), CTPS1-KO Jurkat cells (white circle), CTPS1-KO Jurkat cells complemented with GFP (green circle), CTPS1Δ18 plus GFP (red circle), or CTPS1 plus GFP (gray circle). Complemented cells were preselected for high CTPS1 expression by cytidine starvation. Data from 3–5 independent experiments. Each symbol corresponds to the CTPS activity of an independent biological replicate. The horizontal bars represent the median ± SEM. Values were compared 2 by 2 using Mann-Whitney U tests. **P < 0.01; ***P < 0.001.

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