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Differential transcriptome and development of human peripheral plasma cell subsets
Swetha Garimalla, … , Iñaki Sanz, F. Eun-Hyung Lee
Swetha Garimalla, … , Iñaki Sanz, F. Eun-Hyung Lee
Published April 2, 2019
Citation Information: JCI Insight. 2019;4(9):e126732. https://doi.org/10.1172/jci.insight.126732.
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Research Article Immunology

Differential transcriptome and development of human peripheral plasma cell subsets

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Abstract

Human antibody-secreting cells (ASCs) triggered by immunization are globally recognized as CD19loCD38hiCD27hi. Yet, different vaccines give rise to antibody responses of different longevity, suggesting ASC populations are heterogeneous. We define circulating-ASC heterogeneity in vaccine responses using multicolor flow cytometry, morphology, VH repertoire, and RNA transcriptome analysis. We also tested differential survival using a human cell-free system that mimics the bone marrow (BM) microniche. In peripheral blood, we identified 3 CD19+ and 2 CD19– ASC subsets. All subsets contributed to the vaccine-specific responses and were characterized by in vivo proliferation and activation. The VH repertoire demonstrated strong oligoclonality with extensive interconnectivity among the 5 subsets and switched memory B cells. Transcriptome analysis showed separation of CD19+ and CD19– subsets that included pathways such as cell cycle, hypoxia, TNF-α, and unfolded protein response. They also demonstrated similar long-term in vitro survival after 48 days. In summary, vaccine-induced ASCs with different surface markers (CD19 and CD138) are derived from shared proliferative precursors yet express distinctive transcriptomes. Equal survival indicates that all ASC compartments are endowed with long-lived potential. Accordingly, in vivo survival of peripheral long-lived plasma cells may be determined in part by their homing and residence in the BM microniche.

Authors

Swetha Garimalla, Doan C. Nguyen, Jessica L. Halliley, Christopher Tipton, Alexander F. Rosenberg, Christopher F. Fucile, Celia L. Saney, Shuya Kyu, Denise Kaminski, Yu Qian, Richard H. Scheuermann, Greg Gibson, Iñaki Sanz, F. Eun-Hyung Lee

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Figure 6

Transcriptomic analysis of ASC subsets.

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Transcriptomic analysis of ASC subsets.
(A) Heatmap of 672 transcripts d...
(A) Heatmap of 672 transcripts differentially expressed among pop 2, pop 3, and pop 5 RNA-seq profiles from 6 subjects. Red color indicates relatively high expression, blue low expression. Two major blocks of genes upregulated or downregulated in pop 5 relative to pops 2 and 3 are indicated. Sample identities to the right show that pairs of samples from the same individual tend to cluster together. (B) Heatmap of PC1 of 29 gene sets found to be enriched in the differentially expressed genes also shows differentiation of pop 5 from pops 2 and 3, with only minor differences between the latter two. (C) Bubble plots show significantly biased gene sets in each pairwise comparison, with the size of the bubble proportional to the negative logarithm of the P value for the normalized enrichment score indicated along the x axis (see Supplemental Table 2 for full list of pathway names).

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