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Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
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Research Article Oncology

Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma

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Abstract

Medulloblastoma (MB) is the most prevalent malignant brain tumor in children, accounting for 20% of all childhood brain tumors. The molecular profiling of MB into 4 major subgroups (WNT, SHH, Grp3, and Grp4) emphasizes the heterogeneity of MB and opens paths in which treatments may be targeted to molecularly aggressive and distinct tumors. Current therapeutic strategies for Group 3 MB are challenging and can be accompanied by long-term side effects from treatment. The involvement of altered epigenetic machinery in neoplastic transformation in MB has become more evident. Thus, we performed an epigenomic RNAi and chemical screen and identified SETD8/PRE-SET7/KMT5a as a critical player in maintaining proliferation and cell survival of MB cells. We have found that inhibition of SETD8 effects the migration/invasive ability of MB cells. SETD8 alters H4K20me chromatin occupancy at key genes involved in tumor invasiveness and pluripotency. Interestingly, these results link the aggressive and metastatic behavior of MYC-driven MB with SETD8 activity. Based on our results, we suggest that SETD8 has a critical role mediating Group 3 MB tumorigenesis. Establishing a role for SETD8 as a factor in MYC-driven MB has potential to lead to more effective therapies needed to improve outcomes in high-risk patients.

Authors

Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar

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Figure 1

Combinatorial screen establishes SETD8 as a factor in medulloblastoma growth.

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Combinatorial screen establishes SETD8 as a factor in medulloblastoma gr...
(A) Epigenetic chemical inhibitor screen. D458 neurospheres were exposed to 148 epigenetic chemical inhibitors at 2 μM and 0.5 μM for 8 days. Graphical representation of cell viability is shown for those chemical inhibitors that met a 70% viable cells threshold. (B) Venn diagram representing the 7 overlapping genes from both shRNA epigenetic library screen and epigenetic chemical inhibitor screen. (C) Kaplan-Meier plots indicating overall survival in relation to SETD8 expression in all MB patient populations (χ2 = 16.33, P = 5.3 × 10–5) or in the Group 3 MB subtype (χ2 = 6.91, P = 8.6 × 10–3). See also Supplemental Table 1 and Supplemental Figure 1.

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