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Real-time genomic profiling of histiocytoses identifies early-kinase domain BRAF alterations while improving treatment outcomes
Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar
Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar
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Clinical Research and Public Health Oncology

Real-time genomic profiling of histiocytoses identifies early-kinase domain BRAF alterations while improving treatment outcomes

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Abstract

Many patients with histiocytic disorders such as Langerhans cell histiocytosis (LCH) or Erdheim-Chester disease (ECD) have treatment-refractory disease or suffer recurrences. Recent findings of gene mutations in histiocytoses have generated options for targeted therapies. We sought to determine the utility of prospective sequencing of select genes to further characterize mutations and identify targeted therapies for patients with histiocytoses. Biopsies of 72 patients with a variety of histiocytoses underwent comprehensive genomic profiling with targeted DNA and RNA sequencing. Fifteen patients (21%) carried the known BRAF V600E mutation, and 11 patients (15%) carried various mutations in MAP2K1, which we confirm induce constitutive activation of extracellular signal–regulated kinase (ERK) and were sensitive to inhibitors of mitogen-activated protein kinase kinase (MEK, the product of MAP2K1). We also identified recurring ALK rearrangements, and 4 LCH patients with an uncommon in-frame deletion in BRAF (N486_P490del or N486_T491>K), resulting in constitutive activation of ERK with resistance to V600E-specific inhibitors. We subsequently describe clinical cases where patients with aggressive multisystem LCH experience dramatic and sustained responses to monotherapy with either dabrafenib or trametinib. These findings support our conclusion that comprehensive genomic profiling should be regularly applied to these disorders at diagnosis, and can positively impact clinical care.

Authors

Lynn H. Lee, Anjelika Gasilina, Jayeeta Roychoudhury, Jason Clark, Francis X. McCormack, Joseph Pressey, Michael S. Grimley, Robert Lorsbach, Siraj Ali, Mark Bailey, Philip Stephens, Jeffrey S. Ross, Vincent A. Miller, Nicolas N. Nassar, Ashish R. Kumar

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Figure 5

MEK (MAP2K1) mutants demonstrate altered activation kinetics and exhibit signs of transformation in vitro.

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MEK (MAP2K1) mutants demonstrate altered activation kinetics and exhibit...
(A) NIH/3T3 cells were transduced with retroviruses carrying empty vector or HA-tagged MEK constructs. Shown is a representative immunoblot using antibodies against the HA-tag or GAPDH (control) with the various mutations labeled on the top of each lane. WT, wild type. (B) Transduced cells were treated with murine epidermal growth factor (mEGF) and lysates were analyzed by immunoblotting. Representative blots depict phospho-ERK (pERK) and total ERK (tERK) levels in the various 3T3 clones labeled on the top. Antibodies are labeled to the right with GAPDH used as internal control. (C) 3T3 cells expressing WT and mutant MEK constructs were stimulated with EGF for the indicated time periods; mutant enzymes exhibit prolonged pERK activation in response to sustained EGF stimulation compared with WT MEK. (D) Fibroblasts were plated in monolayer in conventional liquid culture and foci were counted after 21 days. Representative micrographs of cultures expressing the various MEK mutants are shown, labeled on the top, shown at ×40 (upper row) and ×400 (lower row) original magnification. (E) Bar graph depicting the number of foci observed in each condition. Middle horizontal bars represent mean number of foci; error bars represent standard deviation of 3 separate experiments. No foci were seen with WT MEK or vector-only transduced cells. Statistical analysis performed using 1-way ANOVA with Tukey’s test post-hoc. *P < 0.001, **P < 0.0001.

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