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Functional reprogramming of monocytes in patients with acute and convalescent severe COVID-19
Elisa Brauns, … , Arnaud Marchant, Stanislas Goriely
Elisa Brauns, … , Arnaud Marchant, Stanislas Goriely
Published April 5, 2022
Citation Information: JCI Insight. 2022;7(9):e154183. https://doi.org/10.1172/jci.insight.154183.
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Resource and Technical Advance COVID-19 Immunology

Functional reprogramming of monocytes in patients with acute and convalescent severe COVID-19

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Abstract

Severe COVID-19 disease is associated with dysregulation of the myeloid compartment during acute infection. Survivors frequently experience long-lasting sequelae, but little is known about the eventual persistence of this immune alteration. Herein, we evaluated TLR-induced cytokine responses in a cohort of mild to critical patients during acute or convalescent phases (n = 97). In the acute phase, we observed impaired cytokine production by monocytes in the patients with the most severe COVID-19. This capacity was globally restored in convalescent patients. However, we observed increased responsiveness to TLR1/2 ligation in patients who recovered from severe disease, indicating that these cells display distinct functional properties at the different stages of the disease. In patients with acute severe COVID-19, we identified a specific transcriptomic and epigenomic state in monocytes that can account for their functional refractoriness. The molecular profile of monocytes from recovering patients was distinct and characterized by increased chromatin accessibility at activating protein 1 (AP1) and MAF loci. These results demonstrate that severe COVID-19 infection has a profound impact on the differentiation status and function of circulating monocytes, during both the acute and the convalescent phases, in a completely distinct manner. This could have important implications for our understanding of short- and long-term COVID-19–related morbidity.

Authors

Elisa Brauns, Abdulkader Azouz, David Grimaldi, Hanxi Xiao, Séverine Thomas, Muriel Nguyen, Véronique Olislagers, Ines Vu Duc, Carmen Orte Cano, Véronique Del Marmol, Pieter Pannus, Frédérick Libert, Sven Saussez, Nicolas Dauby, Jishnu Das, Arnaud Marchant, Stanislas Goriely

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Figure 8

Epigenetic reprogramming of monocytes in patients with acute and convalescing severe COVID-19.

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Epigenetic reprogramming of monocytes in patients with acute and convale...
(A) MA plot (M [log ratio] and A [mean average]) showing log2 fold change (FC) average read density of differentially accessible regions (DARs) in CD14+ monocytes of controls (blue) and patients at the different phases of the disease (red), with the indicated number of regions. (B) Venn diagrams showing the intersection between the indicated comparisons. (C) Cumulative distribution plot generated by BETA algorithm showing the predicted activating/repressive function of more or less accessible enhancer regions in monocytes during acute and early recovery phases, and the indicated P values determined by the Kolmogorov-Smirnov test (red, upregulated genes; blue, downregulated genes; dashed line, background). (D) Representative ATAC-Seq tracks of CD14+ monocytes for the different groups, with less (blue arrow) or more (red arrow) accessible peaks in comparison with controls. Position of each locus in the genome is indicated at the top of each track. (E) Gene set enrichment network displays clusters of redundant pathways associated with closing regions in acute (left) or opening regions in early recovery patients (right). Nodes represent gene sets, and edges represent mutual overlap. Overlap significance is indicated by the edge’s thickness. Color denseness indicates the normalized enrichment score (NES).

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ISSN 2379-3708

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