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Antimalarial antibody repertoire defined by plasma IG proteomics and single B cell IG sequencing
Camila H. Coelho, … , Michal Fried, Patrick E. Duffy
Camila H. Coelho, … , Michal Fried, Patrick E. Duffy
Published October 13, 2020
Citation Information: JCI Insight. 2020;5(22):e143471. https://doi.org/10.1172/jci.insight.143471.
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Resource and Technical Advance Immunology Vaccines

Antimalarial antibody repertoire defined by plasma IG proteomics and single B cell IG sequencing

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Abstract

Plasma antimalarial Ab can mediate antiparasite immunity but has not previously been characterized at the molecular level. Here, we develop an innovative strategy to characterize humoral responses by integrating profiles of plasma immunoglobulins (IGs) or Abs with those expressed on B cells as part of the B cell receptor. We applied this strategy to define plasma IG and to determine variable (V) gene usage after vaccination with the Plasmodium falciparum zygote antigen Pfs25. Using proteomic tools coupled with bulk immunosequencing data, we determined human antigen-binding fragment [F(ab′)2] peptide sequences from plasma IG of adults who received 4 doses of Pfs25-EPA/Alhydrogel. Specifically, Pfs25 antigen-specific F(ab′)2 peptides (Pfs25-IG) were aligned to cDNA sequences of IG heavy (IGH) chain complementarity determining region 3 from a data set generated by total peripheral B cell immunosequencing of the entire vaccinated population. IGHV4 was the most commonly identified IGHV subgroup of Pfs25-IG, a pattern that was corroborated by V heavy/V light chain sequencing of Pfs25-specific single B cells from 5 vaccinees and by matching plasma Pfs25-IG peptides and V-(D)-J sequences of Pfs25-specific single B cells from the same donor. Among 13 recombinant human mAbs generated from IG sequences of Pfs25-specific single B cells, a single IGHV4 mAb displayed strong neutralizing activity, reducing the number of P. falciparum oocysts in infected mosquitoes by more than 80% at 100 μg/mL. Our approach characterizes the human plasma Ab repertoire in response to the Pfs25-EPA/Alhydrogel vaccine and will be useful for studying circulating Abs in response to other vaccines as well as those induced during infections or autoimmune disorders.

Authors

Camila H. Coelho, Steven T. Nadakal, Patricia Gonzales Hurtado, Robert Morrison, Jacob D. Galson, Jillian Neal, Yimin Wu, C. Richter King, Virginia Price, Kazutoyo Miura, Sharon Wong-Madden, Justin Yai Alamou Doritchamou, David L. Narum, Nicholas J. MacDonald, Maryonne Snow-Smith, Marissa Vignali, Justin J. Taylor, Marie-Paule Lefranc, Johannes Trück, Carole A. Long, Sara A. Healy, Issaka Sagara, Michal Fried, Patrick E. Duffy

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Figure 2

Mass spectrometry analysis pipeline of plasma Pfs25-IG peptides.

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Mass spectrometry analysis pipeline of plasma Pfs25-IG peptides.
Plasma ...
Plasma and PBMC samples were collected from adults vaccinated with 4 doses of Pfs25 TBV in Mali. Total plasma IG was purified on Pfs25 antigen, and after confirming reactivity to Pfs25 in IgG ELISA, digested and fractionated to isolate the F(ab′)2 fragment. Trypsinized F(ab′)2 samples were analyzed by Orbitrap MS/MS and the resulting mass spectra were matched to translated sequences from the IMGT germline reference database (17) and those from the in-house IGH CDR3 data set. To match mass spectra to B cell receptor (BcR) sequences of Pfs25-specific single B cells from the same subject (subject 7), the LAX algorithm (18) was used to rank the most frequent matches.

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