[HTML][HTML] Coding and noncoding landscape of extracellular RNA released by human glioma stem cells

Z Wei, AO Batagov, S Schinelli, J Wang, Y Wang… - Nature …, 2017 - nature.com
Z Wei, AO Batagov, S Schinelli, J Wang, Y Wang, R El Fatimy, R Rabinovsky, L Balaj
Nature communications, 2017nature.com
Tumor-released RNA may mediate intercellular communication and serve as biomarkers.
Here we develop a protocol enabling quantitative, minimally biased analysis of extracellular
RNAs (exRNAs) associated with microvesicles, exosomes (collectively called EVs), and
ribonucleoproteins (RNPs). The exRNA complexes isolated from patient-derived glioma
stem-like cultures exhibit distinct compositions, with microvesicles most closely reflecting
cellular transcriptome. exRNA is enriched in small ncRNAs, such as miRNAs in exosomes …
Abstract
Tumor-released RNA may mediate intercellular communication and serve as biomarkers. Here we develop a protocol enabling quantitative, minimally biased analysis of extracellular RNAs (exRNAs) associated with microvesicles, exosomes (collectively called EVs), and ribonucleoproteins (RNPs). The exRNA complexes isolated from patient-derived glioma stem-like cultures exhibit distinct compositions, with microvesicles most closely reflecting cellular transcriptome. exRNA is enriched in small ncRNAs, such as miRNAs in exosomes, and precisely processed tRNA and Y RNA fragments in EVs and exRNPs. EV-enclosed mRNAs are mostly fragmented, and UTRs enriched; nevertheless, some full-length mRNAs are present. Overall, there is less than one copy of non-rRNA per EV. Our results suggest that massive EV/exRNA uptake would be required to ensure functional impact of transferred RNA on brain recipient cells and predict the most impactful miRNAs in such conditions. This study also provides a catalog of diverse exRNAs useful for biomarker discovery and validates its feasibility on cerebrospinal fluid.
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