GO:: TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of …
EI Boyle, S Weng, J Gollub, H Jin, D Botstein… - …, 2004 - academic.oup.com
Bioinformatics, 2004•academic.oup.com
GO:: TermFinder comprises a set of object-oriented Perl modules for accessing Gene
Ontology (GO) information and evaluating and visualizing the collective annotation of a list of
genes to GO terms. It can be used to draw conclusions from microarray and other biological
data, calculating the statistical significance of each annotation. GO:: TermFinder can be used
on any system on which Perl can be run, either as a command line application, in single or
batch mode, or as a web-based CGI script. Availability: The full source code and …
Ontology (GO) information and evaluating and visualizing the collective annotation of a list of
genes to GO terms. It can be used to draw conclusions from microarray and other biological
data, calculating the statistical significance of each annotation. GO:: TermFinder can be used
on any system on which Perl can be run, either as a command line application, in single or
batch mode, or as a web-based CGI script. Availability: The full source code and …
Abstract
Summary: GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script.
Availability: The full source code and documentation for GO::TermFinder are freely available from http://search.cpan.org/dist/GO-TermFinder/
Oxford University Press