Cooperative binding of TEF-1 to repeated GGAATG-related consensus elements with restricted spatial separation and orientation

SW Jiang, D Desai, S Khan, NL Eberhardt - DNA and cell biology, 2000 - liebertpub.com
SW Jiang, D Desai, S Khan, NL Eberhardt
DNA and cell biology, 2000liebertpub.com
The human transcriptional enhancer factor (TEF) family includes TEF-1, TEF-3, TEF-4, and
TEF-5. The TEFs share a highly conserved 68-amino acid TEA/ATTS DNA-binding domain,
which binds to SV40 GTIIC (GGAATG), SphI (AGTATG), SphII (AGCATG), and muscle-
specific M-CAT (GGTATG) enhansons. We determined the optimal DNA-binding consensus
sequence for TEF-1. Using a purified GST-TEF-1 fusion protein and a random pool of
synthetic oligonucleotides, 31 independent clones were obtained after six rounds of binding …
The human transcriptional enhancer factor (TEF) family includes TEF-1, TEF-3, TEF-4, and TEF-5. The TEFs share a highly conserved 68-amino acid TEA/ATTS DNA-binding domain, which binds to SV40 GTIIC (GGAATG), SphI (AGTATG), SphII (AGCATG), and muscle-specific M-CAT (GGTATG) enhansons. We determined the optimal DNA-binding consensus sequence for TEF-1. Using a purified GST-TEF-1 fusion protein and a random pool of synthetic oligonucleotides, 31 independent clones were obtained after six rounds of binding site selection. DNA sequences analysis revealed that 16 clones contained direct repeats with a 3-bp spacer (DR3), and 15 clones contained a single binding site. The predominate consensus half-site was GGAATG (67%), and the other elements were of the form GAGAT/CATG. The TEF-1 bound to the DR3 as a dimer in a cooperative manner. Cooperative binding was dependent on the spacing and orientation of the half-sites and was inhibited by deoxycholate treatment, providing evidence that protein–protein interactions were involved. The data suggest that TEF dimerization is important for its ability to modulate gene transcription.
Mary Ann Liebert